Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu9g01716 ATGAGCGTTTCACATTTCGCAGTTCTATCGTGTTGTCGTCCACGCTTGGTCCCTTCACTGTCGCGTGCTTCAACGCTCCGTTCTCGCATCCGCTGTTGTACTACTCTCACTGCTACTTCCACAGAGACTCCCACTCCAACCTCCGTGAAAAAACGAGTAGTGTCGGGGGTTCAGCCCACCGGATCAATTCACCTTGGAAACTATTTTGGAGCTATCAAGAATTGGGTTGCTCTTCAGAATGTGTATGAAACACTTTTCTTCATTGTGGACCTGCATGCGATCACATTACCATACGACACCCAACAATTATCTAAGGCTACAAGGTCAACTGCTGCTATTTACCTAGCATGTGGAGTGGATCCTTCCAAGGCTTCAGTATTTGTACAGTCTCATGTTCATGCACATGTAGAATTGATGTGGCTGCTAAGTTCCACGACACCTATTGGTTGGCTGAACAAAATGATACAGTTTAAAGAGAAATCTCGCAAGGCGGGAGATGAAGAAGTTGGGGTTGCTCTTTTGACTTACCCTGTTCTGATGGCTTCTGATATACTCCTGTATCAGTCTGATTTTGTCCCTGTTGGTGAAGATCAAAAGCAGCATTTGGAGTTGACTCGTGACTTGGCTGAACGGGTTAATAATTTATATGGAGGGAGAAAGTGGAAGAAATTAGGGGGCCGAGGTGGTACTATATTTAAGGTTCCAGAGCCCCTTATACCTCCAGCTGGTGCGAGGATAATGTCCCTAACAGATGGCCTGTCGAAGATGTCAAAGTCTGCACCTTCTGATCAATCCAGAATCAATATTCTTGATTCTAAAGATCTTATAGCAAACAAGATCAAACGTTGCAAAACCGATTCATTTCCAAGCTTGGAATTTGGCAACTCTGAGAGGCCTGAATGTAACAATCTTCTCTCTATATACCAGCTTGTTTCAGGAAAGGCGAAAGAGGAAGTTGTTCAGGAATGCCAAAATATGAACTGGGGCACTTTCAAAACCCTTTTAACAGATGCCTTGATTGATCATTTGCATCCTATTCAGGTTCGCCATAAGGAAATCATGTCCGATTCAGGTTATTTAGATGAAGTATTGGCACAGGGTGCTAGGAATGCAGCAGAAATAGCAGATACCACACTTCATAATGTTTATCAAGCAATGGGATTTTTGAGGAGACAGTGA 1179 0.436 MSVSHFAVLSCCRPRLVPSLSRASTLRSRIRCCTTLTATSTETPTPTSVKKRVVSGVQPTGSIHLGNYFGAIKNWVALQNVYETLFFIVDLHAITLPYDTQQLSKATRSTAAIYLACGVDPSKASVFVQSHVHAHVELMWLLSSTTPIGWLNKMIQFKEKSRKAGDEEVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRDLAERVNNLYGGRKWKKLGGRGGTIFKVPEPLIPPAGARIMSLTDGLSKMSKSAPSDQSRINILDSKDLIANKIKRCKTDSFPSLEFGNSERPECNNLLSIYQLVSGKAKEEVVQECQNMNWGTFKTLLTDALIDHLHPIQVRHKEIMSDSGYLDEVLAQGARNAAEIADTTLHNVYQAMGFLRRQ* 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu9g01716 392 ProSitePatterns Aminoacyl-transfer RNA synthetases class-I signature. 59 68 IPR001412 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Lapu9g01716 392 PRINTS Tryptophanyl-tRNA synthetase signature 113 132 IPR002306 GO:0000166|GO:0004830|GO:0005524|GO:0006436
Lapu9g01716 392 PRINTS Tryptophanyl-tRNA synthetase signature 190 211 IPR002306 GO:0000166|GO:0004830|GO:0005524|GO:0006436
Lapu9g01716 392 PRINTS Tryptophanyl-tRNA synthetase signature 63 79 IPR002306 GO:0000166|GO:0004830|GO:0005524|GO:0006436
Lapu9g01716 392 PRINTS Tryptophanyl-tRNA synthetase signature 255 265 IPR002306 GO:0000166|GO:0004830|GO:0005524|GO:0006436
Lapu9g01716 392 FunFam Tryptophan--tRNA ligase, chloroplastic/mitochondrial 53 271 - -
Lapu9g01716 392 NCBIfam tryptophan--tRNA ligase 50 388 IPR002306 GO:0000166|GO:0004830|GO:0005524|GO:0006436
Lapu9g01716 392 Hamap Tryptophan--tRNA ligase [trpS]. 50 389 IPR024109 GO:0004830
Lapu9g01716 392 Gene3D - 248 358 - -
Lapu9g01716 392 Pfam tRNA synthetases class I (W and Y) 51 343 IPR002305 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Lapu9g01716 392 Gene3D HUPs 53 387 IPR014729 -
Lapu9g01716 392 CDD TrpRS_core 52 340 IPR002306 GO:0000166|GO:0004830|GO:0005524|GO:0006436
Lapu9g01716 392 PANTHER TRYPTOPHAN--TRNA LIGASE, MITOCHONDRIAL 25 389 - -
Lapu9g01716 392 FunFam Tryptophan--tRNA ligase 246 356 - -
Lapu9g01716 392 SUPERFAMILY Nucleotidylyl transferase 51 388 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu9g01716 K01867 - gmx:100780447 724.931
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu9g01716 9 31993201 32004526 Lapu9g01716 9 31993201 32004526 ECH