Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu9g01712 ATGGCGGTTTCAGATAGTCCAAGCGGTGCCTCCACGCCGCCTCAACAGGAACAAACCAACAAGTACGGTTTTACGAAGCCTCTCTCTCTCGCGGGTCCAACCGACGCTGATCTCCATCGTAACAACGAGTTGGAGAAGTTCTTGCTCGATTCGGGGCTCTACGAGAGCAATGATGAATCCGCCGCGAGGAAAGAGGTTCTTCTCCGCCTCGATCAGATTGTGAAAAGCTGGGTGAAGCAGTTGACGCGCCAACGTGGCTACACAGATCAGATGGTTGAGGATGCAAACGCAGTCATTTTCACTTTTGGTTCTTATCGACTAGGGGTTCATGGACCTGGAGTTGACATTGACACTTTGTGCATTGGTCCTTCTTATGTGAACCGAGAGGAAGATTTCTTCATCATTTTGCATAACATTCTGGCTGAAATGGAAGAAGTTTCTGAACTTCAGCCAGTTCCTGATGCACATGTTCCAGTGATGAAATTCAAATTCCAGGGAATATCTATAGATTTGCTGTATGCAAGTATATCGCTTTTGGTTGTGCCAGAAGACCTAGATATCTCGCATGGTTCAGTGCTGTATGATGTTGATGAACCAACTGTTCGAAGTCTTAATGGCTGCCGGGTGGCAGATCAAATTCTTAAACTTGTTCCAAATATTGAGCACTTCCGAACTACACTGAGATGCTTGAAGTTTTGGGCTAAAAGGCGTGGTGTTTATTCAAATGTTACTGGATTCCTTGGTGGTGTAAATTGGGCTATTTTAGTTGCTCGAATATGCCAGCTTTACCCTAATGCAATCCCTAGTATGTTGGTTTCTAGATTCTTCAGGGTCTACACACAGTGGCGGTGGCCAAACCCTGTAATGCTATGCTCTATAGAAGAGAACGAACTGGGATTCCCTATATGGGATCCTCGTAGAAACCCTCGAGATAGATTTCACACTATGCCAATAATTACTCCTGCATACCCTTGCATGAATTCAAGCTACAATGTTTCGGCAAGCACTCTTCGTGTCATGATGGAACAGTTCCGCTATGGCAATAAGATCTGTGATGAAATTGACCTCAATAAAGCCCAGTGGAGTGCACTTTTTCAGCCTTATGTCTTTTTTGAGGCATACAAAAACTATTTACAAGTGGACATAGTTGCATCAGACACTGATGATTTACTAGCGTGGAAGGGCTGGGTAGAATCTCGATTGAGGCTGCTTACCCTCAAGATAGAGCGAGATACAAATGGGATGCTACAGTGCCATCCTTACCCACATGAGTATATAGACACATCCAAGCCTTGTGCACATTCTGCATTTTTCATGGGCTTGCAAAGGAAAGAGGGAGTAAGAGGTCAAGAGGGGCAGCAATTTGATATTCGTGGGACAGTTGATGAATTCAGACAAGAAATAAACATGTATATCTACTGGAAGCCAGGAATGGAAATTTTTGTTTCTCATGTTCGTCGAAAGCAACTCCCTGCATTTGTTTTTCCTGATGGTTACAAACGCACTAGAATGCCTAGGCACGTAAGCCATCCAACTGACAAAACAGGCGATGATGCCACAAAGTGCTACTCTGGGTCTGGGCCGTCTGAAAGATGCATCAAGAGGAAAAGTTACCCTGAAATGGTGGAAAAGAAGCCAGACAAACCAGATAAACGGGCATCTATTAGCCCACAGAGGTTAGAATGTGTTTCTCCTGAAAGTTGTACTAATAAATCGGGTGGTACAGCTCAAATGAGTATTGATAGTATTGAAGGGGTTTGGTTAGCTGGTTCAACAACCAAGTATGCTAACAGCAATTGTGAAATTAAGTCATCTGATGTACTCCCAGGAAGTGGACTAAGCACTGAGGTAGCTGACATGCAGATTAGTGAACAAGGCTTTGTCGACCCCACAGATGATATGTTGAAACCGAGGAGTGTAGAAGTTCCGAATGAGAATGGAGTTGTCAATGGGGACAAAGCTCGGGATCTGGCTTTAGATTGCTTGGAAAGTGCAGAAACTGAATCTACTAACAATTTGTCAAACTGTAAAGCGGGTGTCATTGATATGGATCAGCGACTAGACAAAGCATGTAATTTCATCACAAGGGATGAATGCTCAGATTATGTACCAAATGCCAACTCCCAGAACCTCAATTGCGAGATCAGTTCTGAAGAGAGTGGGTGTTTTCTTGGAAATAGAGTGTTTCAAAATATCAGGGCTCAAGAATATAAGGTTTTGAATTTTCTAATCTCTTTGTTTTCTCGGTAA 2250 0.4351 MAVSDSPSGASTPPQQEQTNKYGFTKPLSLAGPTDADLHRNNELEKFLLDSGLYESNDESAARKEVLLRLDQIVKSWVKQLTRQRGYTDQMVEDANAVIFTFGSYRLGVHGPGVDIDTLCIGPSYVNREEDFFIILHNILAEMEEVSELQPVPDAHVPVMKFKFQGISIDLLYASISLLVVPEDLDISHGSVLYDVDEPTVRSLNGCRVADQILKLVPNIEHFRTTLRCLKFWAKRRGVYSNVTGFLGGVNWAILVARICQLYPNAIPSMLVSRFFRVYTQWRWPNPVMLCSIEENELGFPIWDPRRNPRDRFHTMPIITPAYPCMNSSYNVSASTLRVMMEQFRYGNKICDEIDLNKAQWSALFQPYVFFEAYKNYLQVDIVASDTDDLLAWKGWVESRLRLLTLKIERDTNGMLQCHPYPHEYIDTSKPCAHSAFFMGLQRKEGVRGQEGQQFDIRGTVDEFRQEINMYIYWKPGMEIFVSHVRRKQLPAFVFPDGYKRTRMPRHVSHPTDKTGDDATKCYSGSGPSERCIKRKSYPEMVEKKPDKPDKRASISPQRLECVSPESCTNKSGGTAQMSIDSIEGVWLAGSTTKYANSNCEIKSSDVLPGSGLSTEVADMQISEQGFVDPTDDMLKPRSVEVPNENGVVNGDKARDLALDCLESAETESTNNLSNCKAGVIDMDQRLDKACNFITRDECSDYVPNANSQNLNCEISSEESGCFLGNRVFQNIRAQEYKVLNFLISLFSR* 750
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu9g01712 749 CDD NT_PAP_TUTase 62 217 - -
Lapu9g01712 749 FunFam Poly(A) polymerase alpha, putative 55 211 - -
Lapu9g01712 749 Gene3D - 23 365 - -
Lapu9g01712 749 Gene3D Poly(A) polymerase predicted RNA binding domain 369 485 - -
Lapu9g01712 749 MobiDBLite consensus disorder prediction 533 555 - -
Lapu9g01712 749 FunFam Putative poly(A) polymerase gamma 197 365 - -
Lapu9g01712 749 SUPERFAMILY Nucleotidyltransferase 19 216 IPR043519 -
Lapu9g01712 749 Gene3D Beta Polymerase, domain 2 55 211 IPR043519 -
Lapu9g01712 749 Pfam Nucleotidyltransferase domain 96 172 IPR002934 GO:0016779
Lapu9g01712 749 MobiDBLite consensus disorder prediction 504 575 - -
Lapu9g01712 749 PANTHER POLY A POLYMERASE 11 550 - -
Lapu9g01712 749 FunFam Nuclear poly(A) polymerase 4 369 485 - -
Lapu9g01712 749 MobiDBLite consensus disorder prediction 1 26 - -
Lapu9g01712 749 Pfam Poly(A) polymerase predicted RNA binding domain 370 427 IPR007010 GO:0003723|GO:0043631
Lapu9g01712 749 Pfam Poly(A) polymerase predicted RNA binding domain 432 502 IPR007010 GO:0003723|GO:0043631
Lapu9g01712 749 Pfam Poly(A) polymerase central domain 23 366 IPR007012 GO:0043631|GO:1990817
Lapu9g01712 749 MobiDBLite consensus disorder prediction 560 575 - -
Lapu9g01712 749 SUPERFAMILY PAP/OAS1 substrate-binding domain 218 367 - -
Lapu9g01712 749 SUPERFAMILY PAP/Archaeal CCA-adding enzyme, C-terminal domain 370 496 IPR011068 GO:0003723|GO:0016779|GO:0031123
Lapu9g01712 749 MobiDBLite consensus disorder prediction 1 25 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu9g01712 Lapu-Chr9 31948318 31954706 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu9g01712 K14376 - gmx:100802620 1351.65
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu9g01712 9 31948318 31954706 Lapu9g01712 9 31948318 31954706 ECH