Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu9g01618 ATGGTGAACCGCTCTCTCTCCACCGGAATCAGACGGTTCTTCTCTTTCCGCTTCCTCGTTAAAGCTTCTAAACTCCAAAAATTTCACTGCATCAGTTTTGTCTTCGGGACACGAACTCTTTGCAGCACCGTTGCTTGTCGCGCTTCGGCATTTCATGAGCCCTTCTTGCGCAAGCTCAAATCCCCAAACCAGAATCCACTGCTGGCGCTTCAAAATTGGGTGGACGAGGGAAACGATGTTTCGCCCTCCCAGCTCAGAAGCATCGCCAGAACCTTAGTCAAATCGAAACGCTACCACCACGCCCACCAGTTATTTAAATGGATAGAAAACCGGAAGAATTTCCATATGATCCCAGTTGATCATGCTATGAAATTGGACTTAATCATTGAAAATTATGGTTTAACGGAAGCTGAAGAATATTTTATGAATCTATCTGACTCGGCTGCAAAGAAGGCTGCCTGTCTCACACTTCTACGTGGCTATGTTAGATATAGGGACATCAGTAAGGCTGAGGCTTTAATGGTGAAGCTCTATGAACTGGGGCTGGTGGTCAGCCCTCACCCTTTTAATGAGATGATGAAGCTGTATCTAGTGACATGTGAGTACAGGAAGGTGCCCCTTGTTATCCAGCAAATGAAGCGGAATAAAATACCCTGCAATGTTCTGTCCTACAATCTTTGGATGAATGCTTATGGTGAGGAAGAAGGATACGGGATTGCAGCAGTGGAGGCAGTTTTTAGACAAATGCAAAATGACAAGAACGTTGAAGTGGGATGGAGCAGTCTTGCTACATTAGCCAATGTTTTTAAGAAAGCAGGACAATCTAAGAAAGCCATTATGGTTCTCAAAGATGCTGAAAAGAAACTATCTATCTGTAATCGTCTTGGATACTTCTTCCTCATAACACTATATGCTTCTTTGAAGGAAAAGGAAGGAGTCTTGCGGTTATGGGAAGCTAGTAAGGCAGTTGGTGGAAGAATCAGTTGTGCTAACTACATTTGTATACTAACATCCTTGGTGAAGCTTGGGGACATTCTACAAGCCAAGAGAATCTTCTTAGAATGGGAATCTAATTGTCAGAAGTATGATATCAGAGTCTCTAATGTTCTTTTGGGTGCATATGTGAGGAATGGATTGATGGAAGAAGCTGAATCATTACATCTCCACACATTGCAAAAGGGTGGCTGTCCAAACTACAAGACAATGGAGATTCTTGTAGAAGGATATGTGCATTGGCAAAAAATAGACGAGGCTATTGTTGCAATGAGAAGAGCTTTGGCTATGATGAAAAATTGCCATTGGAGGCCACCACATAGACTTGTGTTAGCCATTGCAGAGTTTCTGGAGAAAGATGGGAATCTTGAATATGCGAACAATTATATTACAGATATCCATAATTTTGGTCTTGCTAGTTTACCATTGTATAAAATATTACTAAGGATGCACCTTTATGCTAACAAACCACCTTTCCATATCCTTAAAATGATGGATGAAGATAAGGTTGAGATGGATGATGAGACACATTCCATTGTTAAAGCTTTCAGTGTGTAG 1551 0.4165 MVNRSLSTGIRRFFSFRFLVKASKLQKFHCISFVFGTRTLCSTVACRASAFHEPFLRKLKSPNQNPLLALQNWVDEGNDVSPSQLRSIARTLVKSKRYHHAHQLFKWIENRKNFHMIPVDHAMKLDLIIENYGLTEAEEYFMNLSDSAAKKAACLTLLRGYVRYRDISKAEALMVKLYELGLVVSPHPFNEMMKLYLVTCEYRKVPLVIQQMKRNKIPCNVLSYNLWMNAYGEEEGYGIAAVEAVFRQMQNDKNVEVGWSSLATLANVFKKAGQSKKAIMVLKDAEKKLSICNRLGYFFLITLYASLKEKEGVLRLWEASKAVGGRISCANYICILTSLVKLGDILQAKRIFLEWESNCQKYDIRVSNVLLGAYVRNGLMEEAESLHLHTLQKGGCPNYKTMEILVEGYVHWQKIDEAIVAMRRALAMMKNCHWRPPHRLVLAIAEFLEKDGNLEYANNYITDIHNFGLASLPLYKILLRMHLYANKPPFHILKMMDEDKVEMDDETHSIVKAFSV* 517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu9g01618 516 Gene3D Tetratricopeptide repeat domain 56 240 IPR011990 GO:0005515
Lapu9g01618 516 PANTHER OS12G0527900 PROTEIN 56 502 - -
Lapu9g01618 516 Pfam Pentatricopeptide repeat domain 184 233 IPR002885 -
Lapu9g01618 516 Gene3D Tetratricopeptide repeat domain 267 462 IPR011990 GO:0005515
Lapu9g01618 516 Pfam PPR repeat 368 387 IPR002885 -
Lapu9g01618 516 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 363 397 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu9g01618 Lapu-Chr9 30880380 30886587 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu9g01618 59 454 EF-hand Containing Proteins AT1G02150 31.738 5.39e-71 234
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu9g01618 - - gsj:114409242 851.277
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu9g01618 9 30880380 30886587 Lapu9g01618 9 30880380 30886587 ECH