Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu9g01570 ATGGAGCACTTCAACAACGACGATCTCGAATATGTCGACGACCACTACTACGACGACTTTCCTGACTTCCAAGGCCACACCTCCGGCGACATTGTTCCTCACCAACCCTCCCATGCCGACTATCACGACTCCGACTGCGACTTCGACGACGAAGATCTCCTAACCAGTAATGCAAAGACTGATACCACCGCTTCAGAAGCCAGAAACGGGAAAGACATCCAGGGAATCCCCTGGGAGAGGCTCAATTACAGCAGAGACAAGTACCGCGAGACTCGATTGAAGCAGTATAAAAATTACGAGAATCTCTCTCGTTCACGCCACCACCTTCATAAGGAGTGCTTGAACGTGCAGAAGGGGAAGACCTTCTATGACTTCTTCTTCAATACCAGGCTCGTCAAATCCACAATCGTTCATTTTCAGCTGAGGAATTTGTTGTGGGCAACTTCGAAGCATGATGTATACCTTATGCAAAGCTACTCAGTGATGCACTGGTCCGCGGTATTACGAAGGGGTAAAGAAGTGCTTAACGTAGCCAAACCAATTGTTCCAAACCTTAAGCGTCCTGGGTTTTTAGCTCAGCCTGTCTCCAGAGTGCAAATAAGCACCATGACTGTTAAGGAAAATCTGATGGTGGCAGGTGGTTTCCGTGGTGAGCTTATATGCAAGAATTTGAAGCACCCTGGAGTTCAATTTTGTGGTAAAATAACTACAGATGATAACGCCATAACCAATGCTGTGGATGTTTACCGCAATCCAGCTGGGTCGTTGAGGGTCATCACAGCAAATAATGATTCCCAAGTTCGGGTTTTTGATGCAGAGAATTTTGCTTCTCTTGGTTGTTTCAACTACGATTGGTCTGTTAATAATATTTCTGTTAGTCCGGATGGGAAGTTGTTAGCTGTACTTGGGGACAGTACTGAGTGCTTGATAGCTGATGCTAACACTGGAAAGATTACTGGGAGCTTAAAAGGCCACTTGGACTACTCTTTTGCATCGGCTTGGCACCCAGATGGACGGATATTGGCTACTGGGAATCAGGACACAACTTGCAGGTTGTGGGACATTAGAAACCTTTCACAATCTATAGCTGTGTTAAAGGGAAGAATGGGTGCAATAAGATCCTTAAGATACACATCTGATGGACGGTTTCTGGCCATGGCTGAGCCAGCAGACTTCGTCCATATTTTTGACTCGCATTCTGGTTACGTACAAGGTCAAGAGATAGATCTATTTGGCGAGATTGCTGGTATATCCTTTAGCCCAGACACAGAGGCTCTATTTGTGGGCATTGCGGACCGAACCTATGGTAGCTTGTTAGAGTTCGTGAGAAAACGTTACAATTATTACCTAGACTCCATGTTTTGA 1365 0.4571 MEHFNNDDLEYVDDHYYDDFPDFQGHTSGDIVPHQPSHADYHDSDCDFDDEDLLTSNAKTDTTASEARNGKDIQGIPWERLNYSRDKYRETRLKQYKNYENLSRSRHHLHKECLNVQKGKTFYDFFFNTRLVKSTIVHFQLRNLLWATSKHDVYLMQSYSVMHWSAVLRRGKEVLNVAKPIVPNLKRPGFLAQPVSRVQISTMTVKENLMVAGGFRGELICKNLKHPGVQFCGKITTDDNAITNAVDVYRNPAGSLRVITANNDSQVRVFDAENFASLGCFNYDWSVNNISVSPDGKLLAVLGDSTECLIADANTGKITGSLKGHLDYSFASAWHPDGRILATGNQDTTCRLWDIRNLSQSIAVLKGRMGAIRSLRYTSDGRFLAMAEPADFVHIFDSHSGYVQGQEIDLFGEIAGISFSPDTEALFVGIADRTYGSLLEFVRKRYNYYLDSMF* 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu9g01570 454 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 322 357 - -
Lapu9g01570 454 SUPERFAMILY WD40 repeat-like 194 434 IPR036322 GO:0005515
Lapu9g01570 454 ProSitePatterns Trp-Asp (WD) repeats signature. 341 355 IPR019775 -
Lapu9g01570 454 PANTHER WD REPEAT PROTEIN (AFU_ORTHOLOGUE AFUA_8G05640)-RELATED 6 451 - -
Lapu9g01570 454 SMART WD40_4 274 312 IPR001680 GO:0005515
Lapu9g01570 454 SMART WD40_4 315 354 IPR001680 GO:0005515
Lapu9g01570 454 SMART WD40_4 358 397 IPR001680 GO:0005515
Lapu9g01570 454 SMART WD40_4 228 271 IPR001680 GO:0005515
Lapu9g01570 454 Pfam WD domain, G-beta repeat 317 354 IPR001680 GO:0005515
Lapu9g01570 454 FunFam WD-40 repeat family protein 235 451 - -
Lapu9g01570 454 Gene3D - 221 443 IPR015943 GO:0005515
Lapu9g01570 454 ProSiteProfiles Trp-Asp (WD) repeats profile. 322 363 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu9g01570 Lapu-Chr9 30258855 30264353 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu9g01570 240 434 Miscellaneous Gene Families AT5G08390 25.000 5.85e-12 66.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu9g01570 - - gmx:100775453 794.653
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu9g01570 9 30258855 30264353 Lapu9g01570 9 30258855 30264353 ECH