Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu9g01562 ATGGCTGCTCTCCGAGCCGTGCTTCGTTACATTAACACGGGCACCACCTTCGCTCCACCGCCGCGTCCACCTATGGCGTTGCTTTTGAGTTGTGATGTCACGTGGCACTATCTTTTTCCCTCCAAAACCTTCAGAACCGTTAAATCCCGTGCAGGTTCGGACAGTTACAAGTTAGTGGTGAAGAAAGACGAGCGGTTGGGAGCGGGTGAGTGTGTCGACGAGGTTGTTGGGAGTGGGACCACAATTGCGGCCATCGTAACTTCCTTGGGGGGGCCACCTGCCGCCGTTGGAATCGTTCGGCTTTCGGGCCCTGGGGCAGTGTCTATTGCGGGCCGGGTGTTCCGGTCCGCCAGGAACTCGTGGAGGCCCACCAGCCATGTCGTGGAATACGGCGTCGTCTTGGACTCCGACGGCAACGTGATCGACGAGGTCTTGGCGGTGCCGATGCTGGCTCCAAGGTCGTACACGCGGGAAGATGTGGTGGAGCTTCAGTGTCACGGGAGCGAAGTGTGTCTGCGCCGCGTTCTAAGAACTTGCTTGGAAGCCGGAGCAACGCTTGCTCAACCAGGCGAGTTTACTCTTCGCGCTTTTCTTAACGGTCGTTTGGATCTCTCACAAGCCGAAAATGTTGCAAGATTAATCGCCGCCAAATCTGTTGCTGCTGCAGATTCTGCACTGCAAGGAATTCAGGGTGGTTTTTCTTCTCTTGTTCGATCTTTGAGGAGTCAGTGCATTGATTTGCTTACTGAGATTGAAGCACGATTAGACTTCGACGATGAGATGCCGCCTCTGGATTTAAACCTGATTATGGATAAAATCCAGGACATGTCACGAGACGTTGAGAATGCATTGGAGACAGCAAATTATGACAAGCTGCTGCAGTCTGGATTACAGATAGCAATAGTTGGCCGCCCAAATGTTGGCAAGTCAAGCCTTCTGAATGCATGGAGCAAAAGTGAGAGGGCAATAGTTACTGAAATTGCTGGAACCACTCGCGATGTGATTGAAGCTGGTATCAGTGTCAGTGGCATTCCTATAACCCTTCTCGATACAGCAGGCATCAGGGACACTGATGACATTGTGGAAAAGATTGGCGTAGAGCGATCTGAAGCAGTTGCTAGGGGTGCTGATTTAATTATCATGACTGTGAGTGCTGTTGAAGGGTGGACATCTGAAGACACCAAACTTCTCGAAAGGATTCAATCTACCAAGGGATCAACTGGATCATCCACCCCAGTAATCCTTGTGGTCAACAAGATCGATTGTAAACCTTGTGCTGAGACTGAATGGGACAAAGGATGTCAGAGTCATAAAATTTTCAGCAAACATGTGTTTACATGTGCTGTTACTGGTCAAGGATTACAAGACTTAGAGAGGGCTGTATTACAGATTGTGGGTCTTGAAGGCATTCCTGCTGGGGGTCGCAGATGGACGGTCAATCAGAGACAATGTGAACAACTGGTTCGGACCAAGGAAGCACTTGCAAGGTTACAATCATCAATAAAGGAGGAACTGCCTCTGGATTTTTGGACAATTGATTTGAGGGATGCTGCATTGTCCCTTGGACAGATAAGTGGAGAAAATATATCGGAGGAGGTTTTATCAAATATATTTGGCAAGTTCTGTATTGGTAAATAA 1638 0.4921 MAALRAVLRYINTGTTFAPPPRPPMALLLSCDVTWHYLFPSKTFRTVKSRAGSDSYKLVVKKDERLGAGECVDEVVGSGTTIAAIVTSLGGPPAAVGIVRLSGPGAVSIAGRVFRSARNSWRPTSHVVEYGVVLDSDGNVIDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRTCLEAGATLAQPGEFTLRAFLNGRLDLSQAENVARLIAAKSVAAADSALQGIQGGFSSLVRSLRSQCIDLLTEIEARLDFDDEMPPLDLNLIMDKIQDMSRDVENALETANYDKLLQSGLQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEAGISVSGIPITLLDTAGIRDTDDIVEKIGVERSEAVARGADLIIMTVSAVEGWTSEDTKLLERIQSTKGSTGSSTPVILVVNKIDCKPCAETEWDKGCQSHKIFSKHVFTCAVTGQGLQDLERAVLQIVGLEGIPAGGRRWTVNQRQCEQLVRTKEALARLQSSIKEELPLDFWTIDLRDAALSLGQISGENISEEVLSNIFGKFCIGK* 546
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu9g01562 545 Pfam GTP-binding protein TrmE N-terminus 81 201 IPR018948 -
Lapu9g01562 545 CDD TrmE_N 81 200 IPR018948 -
Lapu9g01562 545 Pfam MnmE helical domain 204 542 IPR025867 -
Lapu9g01562 545 Gene3D - 297 473 IPR027417 -
Lapu9g01562 545 Gene3D tRNA modification GTPase MnmE domain 2 202 545 IPR027368 -
Lapu9g01562 545 Hamap tRNA modification GTPase MnmE [mnmE]. 80 545 IPR004520 GO:0003924|GO:0005525|GO:0006400
Lapu9g01562 545 CDD trmE 294 466 IPR031168 -
Lapu9g01562 545 Gene3D Probable tRNA modification gtpase trme; domain 1 71 201 IPR027266 GO:0005515
Lapu9g01562 545 FunFam tRNA modification GTPase MnmE 76 201 - -
Lapu9g01562 545 FunFam tRNA modification GTPase MnmE 297 473 - -
Lapu9g01562 545 Pfam 50S ribosome-binding GTPase 298 419 IPR006073 GO:0005525
Lapu9g01562 545 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 154 461 IPR027417 -
Lapu9g01562 545 PANTHER TRNA MODIFICATION GTPASE GTPBP3 64 545 - -
Lapu9g01562 545 NCBIfam tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE 94 545 IPR004520 GO:0003924|GO:0005525|GO:0006400
Lapu9g01562 545 ProSiteProfiles TrmE-type guanine nucleotide-binding (G) domain profile. 296 466 IPR031168 -
Lapu9g01562 545 NCBIfam small GTP-binding protein domain 297 424 IPR005225 GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu9g01562 Lapu-Chr9 30160867 30164781 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu9g01562 K03650 - gmx:100779193 944.11
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu9g01562 9 30160867 30164781 Lapu9g01562 9 30160867 30164781 ECH