Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu9g01454 ATGATTAAGCTTTGTTCCCATAGAAAAAAAATATTATCCAAATGGGTGTTGTTTGCGAAAATGCACAGCACAAGTGAGGCGATTCAGGAGGTTGGGGAAGCAAGCGATAGAGTGAGTAAGGTTATGATGACGTGTCCCACACTTGCACTTGACACTGCTCTTAATCAAACTGGAGTTAAAGTTTCCCCTGATTTAGTTGAAAATGTTCTCAAACGTTTTGAGAATGCGGGCATGTCAGCATTTCGGTTCTTCGAGTGGGCAGAGAAGCAGAGAGGGTACTCACACAGCATAAGGGCATATCACTTGATGATTGAATCTTTGGCTAAGATTAGACAGTACCAGATCGCGTGGGACCTTGTTAATGCCATGAGGAAAAAAGGCATGCTAAATGTTGAGACTTTTTGCATCATGATGAGAAAGTATGCTAGGGCTAACAAGGTCGACGAGGCTGTTTACACCTTTAATGTTATGGATAAGTACAATGTGGTTCCAAATCTTGCTGCATTTAATGGTTTGTTAAGTGCTTTGTGCAAGTCCGACAATGTGAGGAAGGCTCAAGAGATTTTTGATGCTATGAAGGGTCGGTTTGTGCCAGACGCGAAAACTTATAGCATTTTGCTTGAGGGGTGGGGAAAAGCTCCGAATCTTCCCCGAGCAAGGGAGGTTTTTGGAGAGATGGTTCGTGCTGGGTGTGATCCTGATGTTGTTACTTACGGTATAATGGTTGATGTTCTTTGCAAAGCGGGGAGGGTTGATGAAGCTGTTGAGGTTGTGAAGGAAATGGACGAGAGCAATTGCAGGCCGACATCTTTCATTTATAGTGTCCTGGTTCATACTTATGGAGTGGAGCACCGGATTGAAGATGCTATTGATACATTCCAGGAGATGGAAAGGAAGGGAATCAAGGCTGATGTTGTGGTGTATAATGCCTTGATTGGTGCCTTTTGTAAAGTAAATAAGTTTAAAAATGTGCATAGGGTCTTGCAGGAGATGGAGATCAATGGCGTTGCTCCTAATTCAAGGACCTGCAACGTTATCATAAGCAGTATGATTGGCCAGGGACAGACTGACAGAGCTTTTAGAGTTTTCCGCCAGATGATCAAGTTGTGCGAACCTGATGCTGACACTTATACAATGATGATAAAAATGTTTTGTGAGAAAAATGATCTGGAGATGGCTCTGAGAATATGGAAGTTTATGAAGTCAAAACAATTTGTTCCAAGCATGCACACCTTTTCTGCCCTTGTCAAGGGGCTGTGTGAAAAAGGTGATGCTGCAAAAGCTTGTGTTGTGCTGGAAGAGATGATAGAGAAGGGAATTCGACCATCACGTATTACTTATGCTGCTACTGCCGCGTCCTTCCCAAATATAAAATGCATTGACGATCAAACACTGTATTTCAGGTCATTGATGATGAGATCATTGGACCATTATCCACTAGATTTTCGAATGTGA 1455 0.4254 MIKLCSHRKKILSKWVLFAKMHSTSEAIQEVGEASDRVSKVMMTCPTLALDTALNQTGVKVSPDLVENVLKRFENAGMSAFRFFEWAEKQRGYSHSIRAYHLMIESLAKIRQYQIAWDLVNAMRKKGMLNVETFCIMMRKYARANKVDEAVYTFNVMDKYNVVPNLAAFNGLLSALCKSDNVRKAQEIFDAMKGRFVPDAKTYSILLEGWGKAPNLPRAREVFGEMVRAGCDPDVVTYGIMVDVLCKAGRVDEAVEVVKEMDESNCRPTSFIYSVLVHTYGVEHRIEDAIDTFQEMERKGIKADVVVYNALIGAFCKVNKFKNVHRVLQEMEINGVAPNSRTCNVIISSMIGQGQTDRAFRVFRQMIKLCEPDADTYTMMIKMFCEKNDLEMALRIWKFMKSKQFVPSMHTFSALVKGLCEKGDAAKACVVLEEMIEKGIRPSRITYAATAASFPNIKCIDDQTLYFRSLMMRSLDHYPLDFRM* 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu9g01454 484 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 234 268 IPR002885 -
Lapu9g01454 484 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 339 369 IPR002885 -
Lapu9g01454 484 Pfam PPR repeat 230 261 IPR002885 -
Lapu9g01454 484 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 130 164 IPR002885 -
Lapu9g01454 484 Gene3D Tetratricopeptide repeat domain 353 478 IPR011990 GO:0005515
Lapu9g01454 484 PANTHER RESPIRATORY COMPLEX I CHAPERONE (CIA84), PUTATIVE (AFU_ORTHOLOGUE AFUA_2G06020)-RELATED 185 449 - -
Lapu9g01454 484 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 408 442 IPR002885 -
Lapu9g01454 484 Pfam PPR repeat 133 161 IPR002885 -
Lapu9g01454 484 Pfam PPR repeat 99 127 IPR002885 -
Lapu9g01454 484 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 165 195 IPR002885 -
Lapu9g01454 484 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 304 338 IPR002885 -
Lapu9g01454 484 Gene3D Tetratricopeptide repeat domain 265 352 IPR011990 GO:0005515
Lapu9g01454 484 NCBIfam pentatricopeptide repeat 202 235 IPR002885 -
Lapu9g01454 484 NCBIfam pentatricopeptide repeat 376 408 IPR002885 -
Lapu9g01454 484 NCBIfam pentatricopeptide repeat 306 339 IPR002885 -
Lapu9g01454 484 NCBIfam pentatricopeptide repeat 133 165 IPR002885 -
Lapu9g01454 484 NCBIfam pentatricopeptide repeat 342 368 IPR002885 -
Lapu9g01454 484 NCBIfam pentatricopeptide repeat 410 443 IPR002885 -
Lapu9g01454 484 NCBIfam pentatricopeptide repeat 272 305 IPR002885 -
Lapu9g01454 484 NCBIfam pentatricopeptide repeat 236 269 IPR002885 -
Lapu9g01454 484 Pfam Pentatricopeptide repeat domain 293 349 IPR002885 -
Lapu9g01454 484 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 199 233 IPR002885 -
Lapu9g01454 484 Pfam PPR repeat family 372 420 IPR002885 -
Lapu9g01454 484 Pfam PPR repeat family 164 209 IPR002885 -
Lapu9g01454 484 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 373 407 IPR002885 -
Lapu9g01454 484 Gene3D Tetratricopeptide repeat domain 25 193 IPR011990 GO:0005515
Lapu9g01454 484 Gene3D Tetratricopeptide repeat domain 194 264 IPR011990 GO:0005515
Lapu9g01454 484 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 269 303 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu9g01454 Lapu-Chr9 28913548 28917446 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu9g01454 91 476 Glycosyltransferase AT1G05670 20.972 5.99e-16 79.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu9g01454 - - gmx:100790096 825.854
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu9g01454 9 28913548 28917446 Lapu9g01454 9 28913548 28917446 ECH