Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu9g01452 ATGGCCGCGCTCTCATATGCACCTTTCTTCGCTCTTCAGAGAATCACTTCCACCGATGCCAACGCGGACGCTTTCTTCATTCGCTCGCGTCCTTCTGTTCCTCCCTGGCCTCGCCTGCGAGGACGTCGTTGCGCACCCGTTCTCGTCGCTGTCGCCTCCGTTAAGGAAAATCTCGGCCGTGTCCAAAAGCGTTTCACCGACTTCACGAGCTTGAACTATTGGGTTGTTCGCGACTACTACCGTCTTGTGAACTCCGTCAACGCCTTCGAGCCTCAGATTCAGGCGCTTTCCGATGAACAGCTGGCCGCAAAAACTGCCGAGTTTCGCCGCCGGCTCGCGCGAGGGGCTACGCTTGCCGACATTCAAGCTGAGGCGTTCGCTGTTGTTCGTGAAGCTGCATGGAGAAAACTTAGAATGCGCCATTTCGATGTTCAGATTATTGGCGGGGCAGTGCTGCATGACGGTTCCATTGCTGAGATGAAAACCGGGGAGGGTAAAACCTTGGTTTCCACACTAGCTGCTTATCTAAATGCCTTGACCTCTGAGGGTGTTCATGTGGTAACTGTTAACGATTATTTAGCTCAGCGTGACGCCGAATGGATGGGACGTGTTCATCGTTTCTTAGGTCTCTCTGTCGGACTTATTCAGAGAGGAATGAATGCTGAAGAACGAAGAATAAACTACAGATGTGATATAACATATACCAATAATTCGGAGCTTGGCTTTGATTACCTACGAGATAATCTTGCTGGAAATCGTGAACAACTTGTAATGAGATGGCCAAAGCCCTTCCATTTTGGAATCGTTGATGAAGTGGATTCTGTCTTGATAGACGAGGGAAGAAATCCTTTGTTAATCAGTGGTGAGGCTAGTAAAGATGCTGCAAGATTCCCTGTTGCTGCAAAAGTAGCTGAACTGCTTACACAGGACATTCATTACAAAGTGGAGCTTAAAGATAATTCTGTGGAGTTGACTGAAGAAGGAATTGCTCTTGCTGAAATGGCTTTAGAAACTAATGATCTTTGGGATGAAAATGATCCCTGGGCCAGATTTGTGATGAATGCTATAAAAGCTAAAGAATTCTATCGCCGAGATGTGCAATACATGGTCAGAGATGGAAAGGCTTTGATTATCAATGAGCTGACAGGAAGAGTTGAGGAGAAAAGGAGATGGTCTGAGGGGATTCACCAGGCTGTGGAGGCAAAGGAAGGTTTGAAGATTCAGGCAGATTCTGTTGTTGTGGCACAGATCACATACCAGTCATTGTTCAAGCTCTATCCAAAGTTGTCAGGAATGACTGGGACTGCCAAAACAGAAGAGAAGGAGTTCTTAAAAATGTTTCGGATGCCAGTCATTGAAGTGCCCACAAATCTTCCTAATATTCGAAAAGATTTACCAATTCAAGCTTTTGCTACTGCTCGTGGGAAATGGGAGCAAGTGCGCCGAGAAGTTGAATATATGTTTAGATTAGGTCGGCCTGTCTTAGTTGGGACAACTAGTGTAGAAAATTCAGAACATTTGTCTGGTCTGCTTTGGGAATGGAATATTCCTCATAATGTTCTGAATGCTAGACCCAAGTATGCTGCAAAAGAAGCTGAAGTTGTTGCACAGGCAGGACGGAAACATGCCATTACCCTCTCTACAAATATGGCCGGCAGGGGCACAGATATAATCCTTGGAGGAAATCCAAAGATGCTTGCCAGAGAAATTATAGAGGATAGCTTACTTTCATTTTTGACACGAGAGGATCCAAACATTGAACTTGCAGATGAAGCTATTTCACAAATGGTGCTTCCAAAGATAAAGGTTGGATCATCATCAATGGCCTTACTGGCTAAGACAACCTTAATGGCCAAATATGTATCCAAAAGTGAGGGTAAAAGTTGGACCTATCAGAAGGCTAAATCTTTTATCTTGGAGGCTATTGAAATGAATCTTTCATATAGTTTGGAAGAGCTGGAAAAGCTTGCTAATGAAGAATCTGAGATGTACCCTCTTGGTCCAACTGTAGCACTTGCCTATCTGTCAGTTTTGAAGGATTGTGAAGAACACTGTTTGCATGAAGGTTCTGAGGTAAAAAGGCTTGGGGGTCTTCATGTGATTGGTACATCTTTACATGAGTCCCGGAGAATAGATAACCAGCTGCGTGGCAGAGCAGGAAGACAAGGGGATCCAGGATCAACACGATTTATGGTCAGTTTGCAGGATGAGATGTTTCGAAAGTTCAATTTTGATACTGAATGGGCAGTGAGACTTATCTCAAAGATTACAAATGATGAGGATCTGCCAATTGAGGGTGATGCTATTGTGAAGCAGCTTTTGGCGCTGCAAATCAATGCAGAGAAGTTCTTCTTTGGCATAAGAAAGAACCTGGTTGAGTTTGATGAAGTATTGGAGGTGCAACGGAAGCATGTTTATGATCTAAGGCAATTAATCTTAACAGGAGACGATGAAAGTTGTTCCCAACACGTGTTGCAGTACATGCAAGCAGTGGTTGACGAGATTGTCTTCAATAATATTGATCCAATGAAGCATCCACGTAGCTGGGGTTTGAGTAAGCTCTTGAAAGAGTTCGTGACTGTTGGTGGAAAGATGCTGCATGAATCTTTTGGAGGAATTAGTGATCACACTTTGCTAAATTCACTTGGGCTACTGAAGGATGTGAGTTCAGTTGATATTATAAACTTTTCCCTTCCAAGTTTGCCAGCACCTCCAAATGCCTTCAGGGGAATACGCAGGAAGAGCTCGTCATTAAGACGATGGCTTGCTATTTGCACGGATGATTTAATTGGGAATGGGAAGTATCAAACCACTTCTAATCTTCTTCGCAAATATCTTGGAGATTTTCTAATTTGTTCATATTTAAATGTTGTTGAAGAGTCTGGTTATGATGAAAGCCATGCAAAGGAAATTGAGAGAGCTGTTCTTTTGCAAACTCTTGATTGTTTCTGGAGAGATCATCTTGTAAACATGAATAGGCTCAGCTCTGCGGTGAACATTAGGAGCTTTGGCCACAGAAATCCTCTTGAAGAGTATAAAATTGATGGTTGTCGGTTTTTTATCTCAATGCTCAGTGCCACTCGGAGGTTAACTGTAGAAGCACTGCTGCGGTATTGGGCATCTCCAATGGAATCCGAAGAACTATTTTTGTCATGA 3156 0.4369 MAALSYAPFFALQRITSTDANADAFFIRSRPSVPPWPRLRGRRCAPVLVAVASVKENLGRVQKRFTDFTSLNYWVVRDYYRLVNSVNAFEPQIQALSDEQLAAKTAEFRRRLARGATLADIQAEAFAVVREAAWRKLRMRHFDVQIIGGAVLHDGSIAEMKTGEGKTLVSTLAAYLNALTSEGVHVVTVNDYLAQRDAEWMGRVHRFLGLSVGLIQRGMNAEERRINYRCDITYTNNSELGFDYLRDNLAGNREQLVMRWPKPFHFGIVDEVDSVLIDEGRNPLLISGEASKDAARFPVAAKVAELLTQDIHYKVELKDNSVELTEEGIALAEMALETNDLWDENDPWARFVMNAIKAKEFYRRDVQYMVRDGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKMFRMPVIEVPTNLPNIRKDLPIQAFATARGKWEQVRREVEYMFRLGRPVLVGTTSVENSEHLSGLLWEWNIPHNVLNARPKYAAKEAEVVAQAGRKHAITLSTNMAGRGTDIILGGNPKMLAREIIEDSLLSFLTREDPNIELADEAISQMVLPKIKVGSSSMALLAKTTLMAKYVSKSEGKSWTYQKAKSFILEAIEMNLSYSLEELEKLANEESEMYPLGPTVALAYLSVLKDCEEHCLHEGSEVKRLGGLHVIGTSLHESRRIDNQLRGRAGRQGDPGSTRFMVSLQDEMFRKFNFDTEWAVRLISKITNDEDLPIEGDAIVKQLLALQINAEKFFFGIRKNLVEFDEVLEVQRKHVYDLRQLILTGDDESCSQHVLQYMQAVVDEIVFNNIDPMKHPRSWGLSKLLKEFVTVGGKMLHESFGGISDHTLLNSLGLLKDVSSVDIINFSLPSLPAPPNAFRGIRRKSSSLRRWLAICTDDLIGNGKYQTTSNLLRKYLGDFLICSYLNVVEESGYDESHAKEIERAVLLQTLDCFWRDHLVNMNRLSSAVNIRSFGHRNPLEEYKIDGCRFFISMLSATRRLTVEALLRYWASPMESEELFLS* 1052
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu9g01452 1051 SUPERFAMILY Pre-protein crosslinking domain of SecA 288 409 IPR036670 GO:0016020|GO:0017038
Lapu9g01452 1051 NCBIfam preprotein translocase subunit SecA 86 857 IPR000185 GO:0005524|GO:0006605|GO:0006886
Lapu9g01452 1051 SUPERFAMILY Helical scaffold and wing domains of SecA 769 867 IPR036266 -
Lapu9g01452 1051 CDD SF2_C_secA 462 733 IPR044722 -
Lapu9g01452 1051 PANTHER SECA INNER MEMBRANE COMPONENT OF SEC PROTEIN SECRETION SYSTEM 50 1048 IPR000185 GO:0005524|GO:0006605|GO:0006886
Lapu9g01452 1051 Pfam SecA Wing and Scaffold domain 763 1038 IPR011116 GO:0016020|GO:0017038
Lapu9g01452 1051 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 67 457 IPR027417 -
Lapu9g01452 1051 SUPERFAMILY Helical scaffold and wing domains of SecA 939 1048 IPR036266 -
Lapu9g01452 1051 FunFam Protein translocase subunit SecA 768 887 - -
Lapu9g01452 1051 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 459 746 IPR027417 -
Lapu9g01452 1051 Gene3D Helical scaffold and wing domains of SecA 914 1041 - -
Lapu9g01452 1051 FunFam Protein translocase subunit SecA 79 299 - -
Lapu9g01452 1051 Gene3D - 290 410 - -
Lapu9g01452 1051 SMART SecA_DEAD_2 65 444 IPR011115 GO:0005524|GO:0016020|GO:0017038
Lapu9g01452 1051 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 147 310 IPR014001 -
Lapu9g01452 1051 Hamap Protein translocase subunit SecA [secA]. 53 1041 IPR000185 GO:0005524|GO:0006605|GO:0006886
Lapu9g01452 1051 ProSiteProfiles SecA family profile. 61 765 IPR014018 -
Lapu9g01452 1051 Gene3D - 459 765 IPR027417 -
Lapu9g01452 1051 SMART SecA_PP_bind_2 289 400 IPR011130 GO:0016020|GO:0017038
Lapu9g01452 1051 Gene3D - 80 457 IPR027417 -
Lapu9g01452 1051 Pfam SecA preprotein cross-linking domain 300 400 IPR011130 GO:0016020|GO:0017038
Lapu9g01452 1051 FunFam Preprotein translocase SecA subunit 290 410 - -
Lapu9g01452 1051 Gene3D Helical scaffold and wing domains of SecA 768 871 - -
Lapu9g01452 1051 Pfam SecA DEAD-like domain 75 443 IPR011115 GO:0005524|GO:0016020|GO:0017038
Lapu9g01452 1051 CDD DEXDc_SecA 100 456 - -
Lapu9g01452 1051 FunFam Protein translocase subunit SecA 909 1038 - -
Lapu9g01452 1051 PRINTS SecA protein signature 381 403 IPR000185 GO:0005524|GO:0006605|GO:0006886
Lapu9g01452 1051 PRINTS SecA protein signature 228 248 IPR000185 GO:0005524|GO:0006605|GO:0006886
Lapu9g01452 1051 PRINTS SecA protein signature 121 145 IPR000185 GO:0005524|GO:0006605|GO:0006886
Lapu9g01452 1051 PRINTS SecA protein signature 175 185 IPR000185 GO:0005524|GO:0006605|GO:0006886
Lapu9g01452 1051 PRINTS SecA protein signature 418 435 IPR000185 GO:0005524|GO:0006605|GO:0006886
Lapu9g01452 1051 PRINTS SecA protein signature 159 173 IPR000185 GO:0005524|GO:0006605|GO:0006886
Lapu9g01452 1051 PRINTS SecA protein signature 455 468 IPR000185 GO:0005524|GO:0006605|GO:0006886
Lapu9g01452 1051 Coils Coil 639 659 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu9g01452 Lapu-Chr9 28878264 28909049 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu9g01452 K03070 - gmx:100793437 1886.31
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu9g01452 9 28878264 28909049 Lapu9g01452 9 28878264 28909049 ECH