Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu9g01442 ATGTGTCTCCTGACCCAATCTGACTTGAAGCGTATTTTTGAGAAAGTGGACGTGAATGGCGACGGGTTGGTGAGCCTTGAGGAGCTGAATCGGATGCTTCAGATGACAGGTAATTCCCACTACAGCATTCAAGAGTTGGAATCGCTGGTGGAAAAGAAGAGCCTTGGTTTCAGCGAGTTCTTGTTCTTTTACAACTCCATTTCGGAGCAGAACAATGGAGAGAGTAGAGGAGGTGGTGACACGCAGGAATTGGAGAGCGACCTGGTGAAAACGTTCGAGGTGTTTGACTTGGATGGGGATGGTTTCATCACCAGCCATGAGCTTGAGTCTGTGTTGAAGAGGCTTGGCTTGTGGGATGAAACCAATTGCAATGATTGTAGAACCATGATTCGATTCTACGACACCAACTTGGATGGTCGTCTTGATTTCCAAGAATTCAAGAATATGATGTTGGTTTCCAGAGCCTGA 468 0.4658 MCLLTQSDLKRIFEKVDVNGDGLVSLEELNRMLQMTGNSHYSIQELESLVEKKSLGFSEFLFFYNSISEQNNGESRGGGDTQELESDLVKTFEVFDLDGDGFITSHELESVLKRLGLWDETNCNDCRTMIRFYDTNLDGRLDFQEFKNMMLVSRA* 156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu9g01442 155 Pfam EF-hand domain pair 100 151 IPR002048 GO:0005509
Lapu9g01442 155 SMART efh_1 125 153 IPR002048 GO:0005509
Lapu9g01442 155 SMART efh_1 87 115 IPR002048 GO:0005509
Lapu9g01442 155 SMART efh_1 8 36 IPR002048 GO:0005509
Lapu9g01442 155 ProSitePatterns EF-hand calcium-binding domain. 17 29 IPR018247 -
Lapu9g01442 155 ProSiteProfiles EF-hand calcium-binding domain profile. 4 39 IPR002048 GO:0005509
Lapu9g01442 155 Gene3D - 5 70 - -
Lapu9g01442 155 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 10 150 - -
Lapu9g01442 155 Pfam EF hand 8 35 IPR002048 GO:0005509
Lapu9g01442 155 ProSiteProfiles EF-hand calcium-binding domain profile. 121 155 IPR002048 GO:0005509
Lapu9g01442 155 SUPERFAMILY EF-hand 7 151 IPR011992 -
Lapu9g01442 155 FunFam Probable calcium-binding protein CML44 5 67 - -
Lapu9g01442 155 CDD EFh 87 150 IPR002048 GO:0005509
Lapu9g01442 155 Gene3D - 75 154 - -
Lapu9g01442 155 ProSitePatterns EF-hand calcium-binding domain. 96 108 IPR018247 -
Lapu9g01442 155 ProSiteProfiles EF-hand calcium-binding domain profile. 83 118 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu9g01442 Lapu-Chr9 28766189 28766656 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu9g01442 3 151 EF-hand Containing Proteins AT1G21550 42.282 1.21e-35 119
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu9g01442 K13448 - gmx:100527117 259.996
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu9g01442 9 28766189 28766656 Lapu9g01442 9 28766189 28766656 ECH