Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu9g01439 ATGGCACATTTGGAGGAAATCAGAGAGAAGCAAAGAGCTCGTGGCCCAGCCACCATACTGGCTATTGGTACTGCAACTCCAACCAACTGCATTTATCAATCTGACTTCACCGATTATTACTTTCGAGTCACCAAGAGTGAACACATGACTCAACTCAAGGCCAAGTTAAAGCGCATATGTGAGAAGTCGATGATAGAGAAACGCTACATACACCTGACTGAAAAAATGCTGAAAGAAAACCCCAACATAAGCACTTATGAGGAACCATCCTTGGATGCACGCCAAGACATACTAGTTGAGGAGGTTCCTAAGCTTGGTGAGAAGGCAGCATCTAAAGCCATAAAGGAATGGGGCAGACCAATATCAGATATTACTCATCTCATATTTTGCTCCACCTCTGGTGTAGACATGCCTGGTGCTGATTACCAGCTTGTGAGGCTCTTAGGCCTTAAACCATCCACCAAGAGGTTCATGTTATACCATCAAGGGTGTTTTGCTGGTGGCACCGTGCTTCGTCTCGCTAAAGACCTTGCTGAGAATAATGCCGGAGCACGTGTTCTGGTGGTATGTTCTGAGATCACAGTTGTCACCTTTCGTGGACCCTGTGAAACACACTTGGACTCGTTGGTGGGACAAGCACTCTTTGGAGATGGAGCTTCATCCGTGATCGTTGGATCCGATCCTGACACATCCATTGAACGACCACTGTTTCACCTTGTCTCAGCATCGGAGACAATTCTACCCAACTCTGAGGGTGCAATTGAAGGACACTTGCGTGAGGTGGGACTAACGTTCCATCTTAAGGATAGCGTTCCTCAGTTGATCGGAGAGAACATAGAGAAAAGCCTTGAGGAAACCTTCCACCCACTTGGGATCAGTGATTGGAACTCGTTGTTTTGGGTTACCCACCCAGGTGGCCCTGCAATCTTGAAGCAGATAGAAGCAACGCTTGGGTTGAACCCTGATAAGTTGAGAGCAACTAAACAAGTTCTGAGAGAGTATGGGAACATGTCGAGTGCATGTGTGCTGTTTATACTGGATGAGATGAGAAGATGGTCCTTGGAGGAAGGCAAATCGAGTACCGGTGAAGGACTAAAGTGGGGTGTTTTATATGGGTTTGGCCCTGGCCTGACCATGGAAACCATAGCTTTGCACAGCGCCACCATACACCCAAACAACTAG 1182 0.4729 MAHLEEIREKQRARGPATILAIGTATPTNCIYQSDFTDYYFRVTKSEHMTQLKAKLKRICEKSMIEKRYIHLTEKMLKENPNISTYEEPSLDARQDILVEEVPKLGEKAASKAIKEWGRPISDITHLIFCSTSGVDMPGADYQLVRLLGLKPSTKRFMLYHQGCFAGGTVLRLAKDLAENNAGARVLVVCSEITVVTFRGPCETHLDSLVGQALFGDGASSVIVGSDPDTSIERPLFHLVSASETILPNSEGAIEGHLREVGLTFHLKDSVPQLIGENIEKSLEETFHPLGISDWNSLFWVTHPGGPAILKQIEATLGLNPDKLRATKQVLREYGNMSSACVLFILDEMRRWSLEEGKSSTGEGLKWGVLYGFGPGLTMETIALHSATIHPNN* 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu9g01439 393 ProSitePatterns Chalcone and stilbene synthases active site. 156 172 IPR018088 GO:0009058|GO:0016746
Lapu9g01439 393 Gene3D - 1 235 IPR016039 GO:0016746
Lapu9g01439 393 PANTHER HYDROXYMETHYLGLUTARYL-COA SYNTHASE 5 387 IPR011141 GO:0009058|GO:0016747
Lapu9g01439 393 SUPERFAMILY Thiolase-like 235 385 IPR016039 GO:0016746
Lapu9g01439 393 CDD CHS_like 16 384 - -
Lapu9g01439 393 Gene3D - 236 390 IPR016039 GO:0016746
Lapu9g01439 393 Pfam Chalcone and stilbene synthases, N-terminal domain 5 228 IPR001099 -
Lapu9g01439 393 SUPERFAMILY Thiolase-like 1 233 IPR016039 GO:0016746
Lapu9g01439 393 PIRSF PKS_III 2 388 IPR011141 GO:0009058|GO:0016747
Lapu9g01439 393 Pfam Chalcone and stilbene synthases, C-terminal domain 239 387 IPR012328 -
Lapu9g01439 393 FunFam Chalcone synthase 2 1 235 - -
Lapu9g01439 393 FunFam Chalcone synthase 1 236 388 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu9g01439 Lapu-Chr9 28736409 28738731 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu9g01439 K00660 - nnu:104591893 624.009