Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu9g01421 ATGCCTTATCCTTTGTTTTCCTCCCCTTTTGTTACAGTTGGAAAAGTTGAACATTTTTGTTGTGCTGAAACTGAAATGGTTGGCAAGGGTAATCTGCGGGCTGAGGACTTGAACTTGTGCTTTGAGAAGCTTATGATGGTGGCTGGGAGTGGGAACAGTGAGAAAGGGGTGAACTTGAAGGTTGGGGTGATTACCGAGTGGAAGGATATTCCTGTGGAGCTTTTGATGCAAATTTTGTCCCTTGTGGATGATCAGACAGTGATCACCGCATCTGGAGTTTGCCGTGGCTGGAGAGATGCTATCTACTTTGGCCTTGCTCGTTTATCACTCTCATGGTGTAGCAAGAACATGAATAACTTGGTCCTATCACTTGTTCCCAAATTCACAAAACTGCAAACTCTAATCCTTCGTCAAGACAAGCCTCAACTAGAGGATAAAGCTGTTGAGACTATTGCAGACTGCTGTCATGAATTGCAGATCCTGGACCTCAGCAAAAGTTTCAAGCTAACTGATCGTTCACTTTATGCTATTGCATTAGGTTGTCGCGATCTTACAAAACTCAACATCAGTGGGTGTTCAGCATTTAGTGACAGTGCCCTGGCTTACCTTGCTAGTTTCTGCAGAAAACTGAAAGTTCTAAATCTTTGTGGATGCGTTAGAGCTGCATCTGATACTGCATTACAGGCTATTGGACAGTACTGCAATCAGTTACAATCTTTGAACCTTGGATGGTGTGATAACGTTGGCGATGTTGGAGTGACTACTTTAGCATATGGGTGCCCTGATCTTAGGATAGTTGACTTGTGTGGCTGTGTCCGTATAACAGCGAGGTTTATTGCAGATGATAGCGTGATTGCTTTGGCTAACAGATGCCCCCATCTGAGGTCCCTTGGACTGTACTACTGCAAGAACATCACAGACAGAGCAATGTATTCTTTGGCACACAGCAAGGTGAACAACAGGATATCTGTGAAAGGAGGAAATGATGAGGATGGGTTAAGGACTTTGAACATCAGCCAATGCACTGCACTCACCCCATCTGCTGTTCAAGCTGTTTGTGATTCATTCCCATCTCTCCACACATGCTCAGGGAGGCACTCACTCATCATGAGTGGCTGTCTCAACTTGACCTCTGTGCATTGTGCCTGTGCTATCCATGCACACCGTGCATTCACCTATTTTCCTCATCCAGCTCATTAA 1200 0.4492 MPYPLFSSPFVTVGKVEHFCCAETEMVGKGNLRAEDLNLCFEKLMMVAGSGNSEKGVNLKVGVITEWKDIPVELLMQILSLVDDQTVITASGVCRGWRDAIYFGLARLSLSWCSKNMNNLVLSLVPKFTKLQTLILRQDKPQLEDKAVETIADCCHELQILDLSKSFKLTDRSLYAIALGCRDLTKLNISGCSAFSDSALAYLASFCRKLKVLNLCGCVRAASDTALQAIGQYCNQLQSLNLGWCDNVGDVGVTTLAYGCPDLRIVDLCGCVRITARFIADDSVIALANRCPHLRSLGLYYCKNITDRAMYSLAHSKVNNRISVKGGNDEDGLRTLNISQCTALTPSAVQAVCDSFPSLHTCSGRHSLIMSGCLNLTSVHCACAIHAHRAFTYFPHPAH* 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu9g01421 399 CDD F-box_AtSKP2-like 66 113 - -
Lapu9g01421 399 Pfam F-box-like 68 101 IPR001810 GO:0005515
Lapu9g01421 399 PANTHER UNCHARACTERIZED 279 378 - -
Lapu9g01421 399 Pfam Leucine Rich repeat 291 314 IPR001611 GO:0005515
Lapu9g01421 399 Pfam Leucine Rich repeat 234 257 IPR001611 GO:0005515
Lapu9g01421 399 SUPERFAMILY F-box domain 67 103 IPR036047 GO:0005515
Lapu9g01421 399 Gene3D Ribonuclease Inhibitor 63 334 IPR032675 -
Lapu9g01421 399 SMART LRR_CC_2 181 206 IPR006553 -
Lapu9g01421 399 SMART LRR_CC_2 234 259 IPR006553 -
Lapu9g01421 399 SMART LRR_CC_2 260 290 IPR006553 -
Lapu9g01421 399 SMART LRR_CC_2 330 355 IPR006553 -
Lapu9g01421 399 SMART LRR_CC_2 207 233 IPR006553 -
Lapu9g01421 399 SMART LRR_CC_2 155 180 IPR006553 -
Lapu9g01421 399 SMART LRR_CC_2 128 154 IPR006553 -
Lapu9g01421 399 SMART LRR_CC_2 291 316 IPR006553 -
Lapu9g01421 399 SUPERFAMILY RNI-like 103 317 - -
Lapu9g01421 399 FunFam F-box protein SKP2B 102 327 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu9g01421 Lapu-Chr9 28498018 28502176 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu9g01421 K03875 - gmx:100818928 712.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu9g01421 9 28498018 28502176 Lapu9g01421 9 28498018 28502176 ECH