Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu9g01410 ATGAGCCACCGGGGAATGGACCGCGATGACGACGATGACGATTACATGGATGACGAGCAGGTTGCCGACTTCGAAGAGGAGGAGGAGGACCGCCGAGGACGCGGCGGCAGGAAGCGCAGAAGATCTGGTTTCATCGACGATGACGCCGAGGAGGTAGATGAGGATGATGAAGAGGAGGACGACGATGATGAGGATTTCGATGCCCGAGGCGGTCGCAGGCGCCAGTATAAGAAGGTTTCAGCTTCCAATTTTTTTGACGAGGAAGCCGTGGTGGATAGCGATGAGGAAGAGGAAGAGGAGGAAGGCGAAGACGACTTTATTGTGGAGGGTGGAGCGGATCTTCCAGAAGAAGATGATGGGAGAAGGATGCGTAATAGACGTATGCTGCCACATCACCAAGAAGATCATGAAGATCTTGAAGCTGTGGCCAGAAGCATCCAGGAACGTTATGGAAGGCGCCTAACGGATTATGATGAAGAAACAACAGATGTAGAACAACAAGCTCTTTTGCCATCTGTGAGAGATCCAAAGCTTTGGATGGTCAAATGTGCAATTGGTCGCGAGAGAGAAACAGCTGTTTGCCTCATGCAAAAGTACATAGATAGGGGATCTGAATTGCAAATCAGATCAGCCATTGCTCTTGATCATCTCAAAAACTATATATACGTGGAAGCAGATAAAGAAGCTCATGTTAGAGAGGCTTGCAAAGGTCTACGTAATATATTTGGCCAAAAAATAACTCTTGTACCAATTAGAGAAATGACTGATGTTCTGTCAGTTGAAAGCAAAGCAATTGATCTTGCTAGAGATACTTGGGTTAGAATGAAGATCGGGACATACAAAGGGGACCTTGCCAAAGTGGTGGATGTTGATAATGTGCGGCAGAGGGTTACTGTCAAATTAATTCCAAGGATAGACCTACAGGCTCTTGCAAATAAATTGGAAGGTAGGGAAGTTGTGAAAAAGAAGGCTTTTGTTCCTCCTCCTCGATTTATGAATGTTGATGAAGCAAGGGAGCTGCATATCCGTGTGGAGCATAGACGTGATGCCTATGGTGAACGATTTGATGCAATTGGGGGCATGATGTTCAAAGATGGTTTCTTATACAAAACTGTATCAATAAAATCCATCAGTGCTCAGAACATCAAACCTACTTTTGATGAGCTGGAAAAATTTCGTAAACCGGGTGAGAGTGGAGATGGTGATGTAGCTAGTCTGTCAACTTTGTTTGCAAACAGGAAGAAAGGGCACTTTATGAAAGGTGATGCTATCATTGTTGTCAAGGGTGATTTAAAGAACTTGAAGGGGAAGGTGGAGAAAGTTGATGAAGATAATGTTCATATAAGACCAGAAATAGAGGGACTTCCAAAAACTATTGCTGTAAATGAAAAGGAGCTTTGTAAATATTTTGAGCCTGGAAACCACGTTAAGGTTGTTTCTGGTGCTCAAGAAGGGGCTACGGGCATGGTTGTGAAGGTGGAGCAGCATGTCTTGATTTTAATATCTGATACAACAAAAGAACATATCCGTGTATTTGCAGACGATGTTGTAGAAAGTTCAGAAGTAACAACCGGAGTTACTAGAATTGGGGACTATGAACTTCGTGATCTTGTATTGCTAGATAATATGAGCTTTGGTGTGATAATACGTGTAGAAAGTGAAGCATTTCAGGTTCTCAAGGGGATTCCTGACAGGCATGAAGTTGTGCTTGTCAAATTAAGAGAGATAAAATGTAAGATAGATAAGAAAATAAGCGTGCAGGATAGGTTTAAGAATACAGTTTCATCAAAGGATGTTGTCCGGATTGTTGATGGTCCCAGCAAAGGGAAACAAGGTCCTGTGGAACACATATATAGAGGAATCTTGTTCATCTTTGATCGCCATCATCTTGAACATGCGGGCTTTATATGTGCTAAGGCCCAATCATGTGTGGTGGTGGGAGGTTCACGCTCCAGTGGTGAAAGAAATGGTGATGCCTACTCAAGATTTCCCACTCTTAGAAGCCCAAGTCGTATTCCACCATCTCCAAGGAGGTTTCCTCGAGGAGGGCCAATGGATTCTGGAGGGAGACATAGGGGTGGGAGGGGGCATGACGGTTTGGCAGGTACAACTGTTAAAGTACGTCAGGGTCCCTATAAAGGCTACCGAGGGCGTGTTATAGATGATAAAGGCACATCAGTTCGTGTTGAACTGGAATCTCAAATGAAGGTTGTAACAGTTGACCGCAACCATATATCTGACAATGTGGCTATAACTCCATATCGTGATACATCTCGCTATGGAATGGGAAGTGAAACCCCAATGCATCCTTCTCGAACACCCTTACATCCATATATGACTCCTATGAGAGATCCTGGAGCAACACCTATTCACGATGGAATGAGGACACCTATGCGTGACCGAGCATGGAATCCTTATACTCCAATGAGTCCTCCAAGGGACAACTGGGAAGATGGAAATCCAGGCTCTTGGGGAGCAAGTCCACAGTATCAGCCTGGAAGCCCTCCATCACGACCATATGAAGCCCCAACTCCTGGTGCTGGTTGGGCTAGCACACCTGGTGGAAATTATAGTGAAGCTGGAACACCTCGGGACAGTTCTGCCTATGCCAATGCTCCAAGCCCATATTTACCATCAACACCTGGTGGGCAGCCTATGACACCAAGTTCAGCATCTTATCTTCCGGGCACTCCTGGAGGACAGCCTATGACTCCAGGCACAGGTGGTATGGACATGATGTCTCCAGTTTTAGGTGGGGACAACGAAGGCCCATGGTTTATACCAGATATATTGGTCAATGTACACAGGGCAGGAGACGAATCTCTTGGAGTTATAAGAGAGGTTCTTCCGGATGGCTCGTACAAGGTCGCTCTGGGATCTAGCGGTAATGGTGAAACGATTACAGCCCTTCCTAATGAAATGGAGGCTGTGGTACCAAGAAAATCAGATAAAATAAAGATTATGGGTGGGGCATTACGTGGTGCCACTGGCAAGTTGATTGGTGTAGATGGTACTGATGGAATTGTAAAGGTAGATGACACGTTGGATGTCAAGATTTTAGACTTGGTTATTTTGGCAAAATTAGCTCAACCATGA 3096 0.4509 MSHRGMDRDDDDDDYMDDEQVADFEEEEEDRRGRGGRKRRRSGFIDDDAEEVDEDDEEEDDDDEDFDARGGRRRQYKKVSASNFFDEEAVVDSDEEEEEEEGEDDFIVEGGADLPEEDDGRRMRNRRMLPHHQEDHEDLEAVARSIQERYGRRLTDYDEETTDVEQQALLPSVRDPKLWMVKCAIGRERETAVCLMQKYIDRGSELQIRSAIALDHLKNYIYVEADKEAHVREACKGLRNIFGQKITLVPIREMTDVLSVESKAIDLARDTWVRMKIGTYKGDLAKVVDVDNVRQRVTVKLIPRIDLQALANKLEGREVVKKKAFVPPPRFMNVDEARELHIRVEHRRDAYGERFDAIGGMMFKDGFLYKTVSIKSISAQNIKPTFDELEKFRKPGESGDGDVASLSTLFANRKKGHFMKGDAIIVVKGDLKNLKGKVEKVDEDNVHIRPEIEGLPKTIAVNEKELCKYFEPGNHVKVVSGAQEGATGMVVKVEQHVLILISDTTKEHIRVFADDVVESSEVTTGVTRIGDYELRDLVLLDNMSFGVIIRVESEAFQVLKGIPDRHEVVLVKLREIKCKIDKKISVQDRFKNTVSSKDVVRIVDGPSKGKQGPVEHIYRGILFIFDRHHLEHAGFICAKAQSCVVVGGSRSSGERNGDAYSRFPTLRSPSRIPPSPRRFPRGGPMDSGGRHRGGRGHDGLAGTTVKVRQGPYKGYRGRVIDDKGTSVRVELESQMKVVTVDRNHISDNVAITPYRDTSRYGMGSETPMHPSRTPLHPYMTPMRDPGATPIHDGMRTPMRDRAWNPYTPMSPPRDNWEDGNPGSWGASPQYQPGSPPSRPYEAPTPGAGWASTPGGNYSEAGTPRDSSAYANAPSPYLPSTPGGQPMTPSSASYLPGTPGGQPMTPGTGGMDMMSPVLGGDNEGPWFIPDILVNVHRAGDESLGVIREVLPDGSYKVALGSSGNGETITALPNEMEAVVPRKSDKIKIMGGALRGATGKLIGVDGTDGIVKVDDTLDVKILDLVILAKLAQP* 1032
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu9g01410 1031 FunFam Transcription elongation factor SPT5 266 308 - -
Lapu9g01410 1031 PIRSF Spt5 2 1031 IPR017071 GO:0006357|GO:0032784
Lapu9g01410 1031 Gene3D - 266 308 IPR014722 -
Lapu9g01410 1031 FunFam Transcription elongation factor SPT5 472 521 - -
Lapu9g01410 1031 MobiDBLite consensus disorder prediction 27 47 - -
Lapu9g01410 1031 MobiDBLite consensus disorder prediction 11 26 - -
Lapu9g01410 1031 Pfam Early transcription elongation factor of RNA pol II, NGN section 177 258 IPR005100 -
Lapu9g01410 1031 MobiDBLite consensus disorder prediction 88 113 - -
Lapu9g01410 1031 FunFam Transcription elongation factor SPT5 685 748 - -
Lapu9g01410 1031 Gene3D - 682 748 IPR014722 -
Lapu9g01410 1031 MobiDBLite consensus disorder prediction 1 122 - -
Lapu9g01410 1031 MobiDBLite consensus disorder prediction 756 913 - -
Lapu9g01410 1031 CDD KOW_Spt5_3 469 519 IPR041976 -
Lapu9g01410 1031 MobiDBLite consensus disorder prediction 855 874 - -
Lapu9g01410 1031 Pfam Spt5 transcription elongation factor, acidic N-terminal 84 171 IPR022581 -
Lapu9g01410 1031 MobiDBLite consensus disorder prediction 649 702 - -
Lapu9g01410 1031 CDD KOW_Spt5_1 270 307 IPR041973 -
Lapu9g01410 1031 ProSitePatterns Ribosomal protein L24 signature. 421 438 IPR005825 GO:0003735|GO:0005840|GO:0006412
Lapu9g01410 1031 CDD KOW_Spt5_6 972 1029 IPR041980 -
Lapu9g01410 1031 Gene3D - 412 469 IPR014722 -
Lapu9g01410 1031 PANTHER SUPPRESSOR OF TY 5 64 1008 IPR039659 GO:0006357|GO:0032784
Lapu9g01410 1031 FunFam Transcription elongation factor SPT5 412 469 - -
Lapu9g01410 1031 Gene3D - 472 521 IPR014722 -
Lapu9g01410 1031 SMART kow_9 978 1005 IPR005824 -
Lapu9g01410 1031 SMART kow_9 417 444 IPR005824 -
Lapu9g01410 1031 SMART kow_9 698 725 IPR005824 -
Lapu9g01410 1031 SMART kow_9 266 293 IPR005824 -
Lapu9g01410 1031 SMART kow_9 593 620 IPR005824 -
Lapu9g01410 1031 SMART kow_9 469 496 IPR005824 -
Lapu9g01410 1031 CDD NGN_Euk 177 259 IPR039385 -
Lapu9g01410 1031 SUPERFAMILY Translation proteins SH3-like domain 410 448 IPR008991 -
Lapu9g01410 1031 CDD KOW_Spt5_4 597 639 IPR041977 -
Lapu9g01410 1031 Gene3D - 157 259 IPR036735 GO:0006355
Lapu9g01410 1031 SUPERFAMILY Translation proteins SH3-like domain 461 520 IPR008991 -
Lapu9g01410 1031 SMART nusgn_4 175 261 IPR006645 GO:0140673
Lapu9g01410 1031 MobiDBLite consensus disorder prediction 48 65 - -
Lapu9g01410 1031 MobiDBLite consensus disorder prediction 883 897 - -
Lapu9g01410 1031 Pfam KOW motif 472 497 IPR005824 -
Lapu9g01410 1031 CDD KOW_Spt5_5 700 746 IPR041978 -
Lapu9g01410 1031 CDD KOW_Spt5_2 418 468 IPR041975 -
Lapu9g01410 1031 FunFam Transcription elongation factor SPT5 157 259 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu9g01410 Lapu-Chr9 28319948 28329268 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu9g01410 K15172 - gmx:100801380 1815.43
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu9g01410 9 28319948 28329268 Lapu9g01410 9 28319948 28329268 ECH