Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu9g01347 ATGGGCTGCTTCTGTTCAACTTCAAAGAGAACGGAAGCACCAGGTTATGAGGAACCCACCGTTCTTGCATCTCAGACACCTTGTGAGTATCATGATCCATCATTTAATGGTAAATCCTTGCTGCTTTGCTGTTCAAATTTTGATTTGGCTTCTGCTAAGAACCATCTAGTTACTGTTAACGAAGTAGAAGCCTTGCATGAACTCTACAAGAAGTTGAGCAATTCAATTATTGAAGATGGTCTTATTCACAGGGAAGAATTCCATCTGGCACTATTCAGGAATAAAAACAAGAAAAACCTGTTTGCAGATAGGATATTTGACTTGTTTGATCTCAAGCGCAATGGGGTCATTGAGTTCGGCGAATTTGTTCGATCATTGGGTGTTTTTCACCCAAATGCACCTTTAGAAGACAAAATTACTTTTGCTTTTAGGTTGTATGATCTGAGGCAGACAGGGTTTATCGAAAGAGAGGAGTTGAAGGAAATGGTATTGGCACTTCTGCACGAGTCGGATCTTGAGCTTTCAGATGATATGATTGAAAGCATTGTGGACAAGACTTTTAGTGATGCTGATATAAACGGTGATGGAAAGATCGATCAAGATGAGTGGAAAGCGTTTGTGTCCAAACATCCATCCCTGATAAAGAATATGACTCTTCCATATCTGAAGGATATTACATTGGCATTTCCCAGTTTTGTTGTAAGAACAGAAATTGAAGAGTCCGAGATTTGA 732 0.3948 MGCFCSTSKRTEAPGYEEPTVLASQTPCEYHDPSFNGKSLLLCCSNFDLASAKNHLVTVNEVEALHELYKKLSNSIIEDGLIHREEFHLALFRNKNKKNLFADRIFDLFDLKRNGVIEFGEFVRSLGVFHPNAPLEDKITFAFRLYDLRQTGFIEREELKEMVLALLHESDLELSDDMIESIVDKTFSDADINGDGKIDQDEWKAFVSKHPSLIKNMTLPYLKDITLAFPSFVVRTEIEESEI* 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu9g01347 243 FunFam calcineurin B-like protein 3 48 240 - -
Lapu9g01347 243 CDD EFh 138 208 IPR002048 GO:0005509
Lapu9g01347 243 Pfam EF-hand domain pair 78 124 IPR002048 GO:0005509
Lapu9g01347 243 ProSiteProfiles EF-hand calcium-binding domain profile. 178 213 IPR002048 GO:0005509
Lapu9g01347 243 ProSitePatterns EF-hand calcium-binding domain. 191 203 IPR018247 -
Lapu9g01347 243 Gene3D - 52 241 - -
Lapu9g01347 243 PRINTS Recoverin family signature 152 170 - -
Lapu9g01347 243 PRINTS Recoverin family signature 105 126 - -
Lapu9g01347 243 PRINTS Recoverin family signature 198 218 - -
Lapu9g01347 243 SMART efh_1 138 166 IPR002048 GO:0005509
Lapu9g01347 243 SMART efh_1 182 210 IPR002048 GO:0005509
Lapu9g01347 243 SMART efh_1 101 129 IPR002048 GO:0005509
Lapu9g01347 243 SUPERFAMILY EF-hand 55 231 IPR011992 -
Lapu9g01347 243 ProSiteProfiles EF-hand calcium-binding domain profile. 134 169 IPR002048 GO:0005509
Lapu9g01347 243 ProSiteProfiles EF-hand calcium-binding domain profile. 97 132 IPR002048 GO:0005509
Lapu9g01347 243 Pfam EF-hand domain pair 137 206 IPR002048 GO:0005509
Lapu9g01347 243 PANTHER CALCINEURIN B 1 240 IPR045198 GO:0005509|GO:0019722|GO:0019900
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu9g01347 Lapu-Chr9 27594698 27599379 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu9g01347 56 243 EF-hand Containing Proteins AT5G24270 76.064 7.66e-102 292
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu9g01347 K06268 - gmx:100811649 380.948
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu9g01347 9 27594698 27599379 Lapu9g01347 9 27594698 27599379 ECH