Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu9g01341 ATGGACTCTCTACAACTCCATCATCTTCTACTTCTGCATCCACGCGCATCATCAACATCAACAAGGCAACTGCGCTTCCCTTCTCCGTTAATACCAAATTCTAGAAAACTCAACTTCCGATCGTTTTCTGCTCACGCTGCTGGCGCTGCTTCGCAAGATGGACCCTTCTCTTCTGAAGAACAAACTATCTCTCTCCCCAAAGATGATAGAGCTCTCGTGCTGGCCAGAGAAACCGACGATTTTGGCTATCTCGTTGGCTTTCGCTTGATTCCTGAGTCTGGTCTTGAAGAGTTTATGAGTGTGCCGCACGCAATAGCTGAGGAAGATTCTAGCAGCGACCTGGTTGAAAAACCTGGGATTAAGGATGCAGACGAAGGGGAAGCTGAGACTAGAGTGTCCCACAACATTGTTTTTGTGACTGCTGAAGCTGCGCCATATTCCAAGACCGGTGGTCTTGCAGATGTTTGTGGCTCTTTGCCAATTGCTCTGGCGGCTCGCGGGCACCGTGTGATGGTTGTCACGCCCAGATACATTCATGGTACTTCGGAGGATGCTAAGTTTGCTGGGGCAGTTGATCTGGATCGATGCACCAAACTTTTGTGCTTTGGAGGTGCTCAAGAAGTTGGCTTTTTCCATGAGTACAGGGAAGGGGTTGATTGGGTATTTGTTGACCACCCCTCGTTCCATAGACCAGGGAATCCGTACGGAGACAAGTTTGGCACTTTTGGGGACAATCAGTTTCGGTTCACTTTACTTTCCCATGCAGCATGTGAAGCGCCATTGGTGCTTCCATTGGGGGGGTTCACTTACGGAGAAAAATGCTTATTCCTTGCTAATGATTGGCATGCCAGCCTAGTTCCAGTACTTTTGGCAGCGAAGTATCGTCCACATGGCGTATATAAGGATGCTCGCAGTATATTAGTGATACATAATATAGCACATCAGGGAGTGGAACCTGCAATTACATATAGTAATTTGGGGCTACCTACAGAATGGTATGGAGCAGTGGAATGGGTGTTCCCTACGTGGGCAAGGACGCATGCTCTTGACACAGGTGAAGCTGTCAACTTTCTAAAAGGTGCCGTTGTTACAGCTGACCGGATTGTGACAGTAAGCAAGGGATATTCCTGGGAGATAACAACTAGTGAAGGTGGATATGGTCTACATGAATTATTAAATAGTCGAAAAAGTATCCTCAATGGGATCACAAATGGAATTGATGTCACTGAATGGGACCCGTCATGTGATAAACATATTGCTTTCAACTACTCTGTTAATGACCTTTCCGGGAAGGCCAAATGCAAGTTTGCTTTGCAGAAGGAATTGGGTCTTCCAGTGAGGCCTGATTGTCCATTGATTGGGTTCATTGGAAGACTGGACTACCAGAAAGGTATTGACTTGATCCGCTGGGCAATGCCAGAGCTCATGGAAGCTGATGTTCAGTTTGTAATGCTTGGTTCAGGAAACCCTGTTTATGAAGACTGGATGAGAGCAACAGAGTCAGCTTACAGAGATAAATTTCGGGGTTGGGTGGGATTTAATGTTCCAATATCTCATAAAATAACTGCAGGTTGTGATATATTGTTAATGCCATCTGCATTCGAGCCCTGTGGACTGAATCAGTTGTATGCAATGAGATATGGAACTATACCAGTGGTTCATGAAACTGGGGGCCTAAGAGACACTGTTCATAATTTTAATCCATATACCGAAGAAAGCAAAGCTGAAAGCACAGGGTGGACATTTTCTCCACTAACAAAGGAGAGCATGTTAGCGGCTCTGAGATATGCCATTCAAACATATAATGAACACAAGTCTTCGTGGGAGGGATTGATGATAAGAGGCATGACAAAGGATTACACATGGGTAAATGCTGCTACTCAATACGAGCAAATCATTGAGTGGGCCTTCATCGACCCTCCCTATTGCTGA 1932 0.457 MDSLQLHHLLLLHPRASSTSTRQLRFPSPLIPNSRKLNFRSFSAHAAGAASQDGPFSSEEQTISLPKDDRALVLARETDDFGYLVGFRLIPESGLEEFMSVPHAIAEEDSSSDLVEKPGIKDADEGEAETRVSHNIVFVTAEAAPYSKTGGLADVCGSLPIALAARGHRVMVVTPRYIHGTSEDAKFAGAVDLDRCTKLLCFGGAQEVGFFHEYREGVDWVFVDHPSFHRPGNPYGDKFGTFGDNQFRFTLLSHAACEAPLVLPLGGFTYGEKCLFLANDWHASLVPVLLAAKYRPHGVYKDARSILVIHNIAHQGVEPAITYSNLGLPTEWYGAVEWVFPTWARTHALDTGEAVNFLKGAVVTADRIVTVSKGYSWEITTSEGGYGLHELLNSRKSILNGITNGIDVTEWDPSCDKHIAFNYSVNDLSGKAKCKFALQKELGLPVRPDCPLIGFIGRLDYQKGIDLIRWAMPELMEADVQFVMLGSGNPVYEDWMRATESAYRDKFRGWVGFNVPISHKITAGCDILLMPSAFEPCGLNQLYAMRYGTIPVVHETGGLRDTVHNFNPYTEESKAESTGWTFSPLTKESMLAALRYAIQTYNEHKSSWEGLMIRGMTKDYTWVNAATQYEQIIEWAFIDPPYC* 644
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu9g01341 643 Hamap Glycogen synthase [glgA]. 134 636 IPR011835 GO:0004373
Lapu9g01341 643 Pfam Starch synthase catalytic domain 135 393 IPR013534 -
Lapu9g01341 643 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 133 635 - -
Lapu9g01341 643 Gene3D Glycogen Phosphorylase B; 408 619 - -
Lapu9g01341 643 NCBIfam glycogen/starch synthase, ADP-glucose type 135 633 IPR011835 GO:0004373
Lapu9g01341 643 Pfam Glycosyl transferases group 1 450 602 IPR001296 GO:0016757
Lapu9g01341 643 CDD GT5_Glycogen_synthase_DULL1-like 135 635 - -
Lapu9g01341 643 Gene3D Glycogen Phosphorylase B; 154 632 - -
Lapu9g01341 643 FunFam Starch synthase, chloroplastic/amyloplastic 135 420 - -
Lapu9g01341 643 PANTHER GRANULE-BOUND STARCH SYNTHASE 1, CHLOROPLASTIC/AMYLOPLASTIC 123 642 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu9g01341 Lapu-Chr9 27531610 27540061 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu9g01341 135 633 Glycosyltransferase AT3G01180 51.976 5.29e-170 503
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu9g01341 K00703 - gmx:100807354 1157.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu9g01341 9 27531610 27540061 Lapu9g01341 9 27531610 27540061 ECH