Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu9g01333 ATGAAAGGTTCATGTCTTCTTCCTCCGCGCTCTTTCACCGGAATCAGGACAAGCAAAGAGCTTCCGCATATGCTATCATTGTGTGAGTTGAAAAGCATAACATGCTTCTCAGTTTGTGATCAAAAGCAAAATTACAATCAAAAGCTTTACATTATTCCCATTAGGACGGCTTGTGTTCGGGTCCGCATCGCAAAATCTTCAGTTGGATCATTGGAATGTGGTGGGACAGGCCCACATAGTGATGCTTATTCAGGATTTTCAGCTCCGAATGACCATCAGAGAATTGGCGGTTTAGAAAGAGAATTGGAAGAATTATTTGATGAAGTGAAAAGAATGATTAGGATGGGAAACAAAAATGATGCTATAGACCTGCTAACTGCGAATTATGAAGCGGTGAAAGAGAGCCTGAATGCAGGTACTAAAGGCATAGAAGAAGCTGCAATTTTGGATGTCGTAGCACTAGGTTACATGGCTGTTGGAGACTTAAAATTTGTTGGATCTCTGTTGGATATGATGGAAGAAGTTGTTGACGATTTGAAGGATGATGCACCTCGTCTGGATTCAATACTTATGCATATGGGAAGTATGTATGCAACATTGAACATGTTTGAAAAATCATTGGACACATATCAGAGGGCAGTCTACATTATGGAGGGGACCTATGGTAAGGATAGTACTTTACTGGTCACACCCTGTTTGGGTATGGCAAAAGTTCTTGGCTCTTCCGGAAAAGCAACAAAAGCAATAGAGATTTACCAGCGTGTAATCACTCTTTTGGGATCAAGTAGAGGTGCCCACAGTAAGGATTTGGTTGTACCTTTACTTAGCCTTGGCAATCTTTTACTCAAAGAAGGGAGAGCCAATGACGCTGAAACTCATTTTACTAGAGTTCTCGACATATACACTAAATTATATGGACAGAATGATGGAAGAATTGGAATGGCTATGAGTTCCCTAGCCAGAGTTAAGAGTGCTCAAGGGAAAACAGGTGAAGCAGTACAATTGTTTAAACGTGCTATTCAGGTCATGAAGGATTCAAATTACTTGTCACCAGATGACAGTATAATGGAAAAGATGAGGGTGGATCTAGCTGAATTACTTCATGCCGCTGGGAGAGGACAAGAAGGAAGAGAGCTATTAGAGGAGTGTCTGTGGATCACGGAGAGGTACAAAGGGAAGGAGCACCCCATCCTGGTGACACACATGATAAATCTTGCAACTTCGTATTCACGGTCGAAGAATTATGCAGATGCCGAGCACCTGTTGAGAAGAAGTTTGCAAATCATGATAAGGCATAAGGGAACTGATGACCAGTCCATCAGCTTTCCTATGTTACACCTGGCAGTTACACTCTACCATTTGAAAAATGATGAAGAAGCAGAGAAACTTGCCCTGGAGGTTTTGCGCATCCGTGAGAAGGCCTTTGGAAAAAATTCCCTTCCTGTTGGGGAGGCTTTGGATTGTTTGGTGTCTATTCAAACCAGACTTGGAAAAGATGACAATGAGTTACTGGAGCTGCTTAGAAGGATCCTGAATATCCAAGAAAGAGAATTTGGATATGAAAGTGAGGAGGTTTTGGTTACCTTGAAAAAAATATTATACTACTTGGATAAACTAGGGAAAAAAGATGAAAAGCTTACCCTTCATAGAAGATTATCTGTGCTTAGGAAAAAATATAACCAGATGGTTAATTATTAA 1698 0.4087 MKGSCLLPPRSFTGIRTSKELPHMLSLCELKSITCFSVCDQKQNYNQKLYIIPIRTACVRVRIAKSSVGSLECGGTGPHSDAYSGFSAPNDHQRIGGLERELEELFDEVKRMIRMGNKNDAIDLLTANYEAVKESLNAGTKGIEEAAILDVVALGYMAVGDLKFVGSLLDMMEEVVDDLKDDAPRLDSILMHMGSMYATLNMFEKSLDTYQRAVYIMEGTYGKDSTLLVTPCLGMAKVLGSSGKATKAIEIYQRVITLLGSSRGAHSKDLVVPLLSLGNLLLKEGRANDAETHFTRVLDIYTKLYGQNDGRIGMAMSSLARVKSAQGKTGEAVQLFKRAIQVMKDSNYLSPDDSIMEKMRVDLAELLHAAGRGQEGRELLEECLWITERYKGKEHPILVTHMINLATSYSRSKNYADAEHLLRRSLQIMIRHKGTDDQSISFPMLHLAVTLYHLKNDEEAEKLALEVLRIREKAFGKNSLPVGEALDCLVSIQTRLGKDDNELLELLRRILNIQEREFGYESEEVLVTLKKILYYLDKLGKKDEKLTLHRRLSVLRKKYNQMVNY* 566
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu9g01333 565 Coils Coil 95 115 - -
Lapu9g01333 565 SUPERFAMILY TPR-like 361 497 IPR011990 GO:0005515
Lapu9g01333 565 Gene3D Tetratricopeptide repeat domain 358 564 IPR011990 GO:0005515
Lapu9g01333 565 PANTHER TETRATRICOPEPTIDE REPEAT PROTEIN (AFU_ORTHOLOGUE AFUA_6G03870) 113 548 - -
Lapu9g01333 565 Gene3D Tetratricopeptide repeat domain 162 357 IPR011990 GO:0005515
Lapu9g01333 565 SUPERFAMILY TPR-like 235 376 IPR011990 GO:0005515
Lapu9g01333 565 ProSiteProfiles TPR repeat profile. 187 220 IPR019734 GO:0005515
Lapu9g01333 565 SUPERFAMILY TPR-like 113 259 IPR011990 GO:0005515
Lapu9g01333 565 Pfam MalT-like TPR region 188 468 IPR041617 -
Lapu9g01333 565 SMART tpr_5 441 474 IPR019734 GO:0005515
Lapu9g01333 565 SMART tpr_5 313 346 IPR019734 GO:0005515
Lapu9g01333 565 SMART tpr_5 399 432 IPR019734 GO:0005515
Lapu9g01333 565 SMART tpr_5 229 262 IPR019734 GO:0005515
Lapu9g01333 565 SMART tpr_5 271 304 IPR019734 GO:0005515
Lapu9g01333 565 SMART tpr_5 187 220 IPR019734 GO:0005515
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu9g01333 - - gmx:100805230 949.118
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu9g01333 9 27464756 27469478 Lapu9g01333 9 27464756 27469478 ECH