Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu9g01278 ATGCTGCCACTTCCACAAGCAACCGTGGCCGTTCACTCTCTGCTCGCATGTCATGGGACGGTCCTCTCTTCCGTCAAATTGATCATTCAGGGTAAAAATCTCGAGCTCACGGATCCTGTAAAACAGCATGTGGAAGATAAGGTGGGAAAGGCGGTTCAGAAGCATAGTCACCTTGTGAGAGAGGTTGATGTGAGGCTTTCTATTAGAGGAGGAGGCGAATTTGGGCGAGGACCCAGAACTCGCAGGTGTGAGGTGACTTTGTTCACTAAGAGGCACGGAGTATTGCGGGCTGAGGAGGACGCTGAAAGCACCTATGGAAGTATAGATTTGGTGTCATCAATCCTTCAGAGGAAGTTGAGGAAAATAAAGGAAAAGGAGTCAGATCATGGTCGCCACATGAAGGGTTTCAATAGGTCGAAGGTTAGGGAGCCGGTGGAGCAATTGCCTGTAGCAGAGGATGAAACATTTTCCCCAGAGGAGGAGGAGGAAGAATCAATTGATGAGGTTGTTCGCACAAAGTACTTTGACATGCCACCCTTGACTGTGTCCGAAGCAATTGAGCAACTTGTAAATGTTGATCATGACTTTTATGGTTTTCGAAACGAAGAAACTGGGGAAATTAATATTGTGTATAAAAGAAAAGAAGGTGGATATGGACTCATTATACCCAAAGGTGATGGTGAAGCAGAGAAATTGGAGCCTGTTGTGCTTGAATCGGCTGTAGAACCCTCCCTGAAAGAATGA 744 0.4637 MLPLPQATVAVHSLLACHGTVLSSVKLIIQGKNLELTDPVKQHVEDKVGKAVQKHSHLVREVDVRLSIRGGGEFGRGPRTRRCEVTLFTKRHGVLRAEEDAESTYGSIDLVSSILQRKLRKIKEKESDHGRHMKGFNRSKVREPVEQLPVAEDETFSPEEEEEESIDEVVRTKYFDMPPLTVSEAIEQLVNVDHDFYGFRNEETGEINIVYKRKEGGYGLIIPKGDGEAEKLEPVVLESAVEPSLKE* 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu9g01278 247 SUPERFAMILY Ribosome binding protein Y (YfiA homologue) 26 132 IPR036567 -
Lapu9g01278 247 Pfam Sigma 54 modulation protein / S30EA ribosomal protein 28 125 IPR003489 GO:0044238
Lapu9g01278 247 NCBIfam ribosome-associated translation inhibitor RaiA 26 130 IPR003489 GO:0044238
Lapu9g01278 247 PANTHER 30S RIBOSOMAL PROTEIN 21 233 - -
Lapu9g01278 247 Gene3D - 179 228 IPR038416 -
Lapu9g01278 247 CDD RaiA 26 125 IPR003489 GO:0044238
Lapu9g01278 247 Pfam Sigma 54 modulation/S30EA ribosomal protein C terminus 167 220 IPR032528 -
Lapu9g01278 247 FunFam Ribosome-binding factor PSRP1, chloroplastic 27 130 - -
Lapu9g01278 247 Gene3D - 26 130 IPR036567 -
Lapu9g01278 247 Hamap Ribosome hibernation promoting factor [hpf]. 25 224 IPR034694 -
Lapu9g01278 247 FunFam ribosome-binding factor PSRP1, chloroplastic 179 230 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu9g01278 - - gmx:100784915 396.741
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu9g01278 9 26774738 26776648 Lapu9g01278 9 26774738 26776648 ECH