Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu9g01274 ATGGATAATTCCACTCAGGACTCTCACCGCCGATCGGAGAACTCGGTGACCTACGAATCGCCCTACCCAATCTACGCCATGGCCTTCTCCCCCTCCCACCCCCACCGTCTCGCCCTCGGAAGCTTCATCGAAGAGTACACTAACCGCGTCCACATCCTCTCTTTCCACCCCGACACCCTCTCCCTCACCCCACACCCCTCCCTCTCCTTCGACCACCCCTACCCTCCAACCAAGCTCATGTTCCACCCCCGCAAACCCTCCCCCTCCTCCTCCTCCGACCTCCTCGCCACATCCGGCGACTACCTCCGCCTCTGGGACGTCCGCGAGAACTCCGTTGAGCCCCTGTCCCTCTTCAACAACAGCAAGACCAGCGAGTTTTGCGCCCCCCTCACCTCCTTCGACTGGAACGACATCGACCACAACCGCATCGGCACCTCCAGCATCGACACCACCTGCACCATCTGGGACATCGAACGCACCGTCGTCGAGACGCAGCTCATCGCCCACGACAAGGAGGTCTACGACATCGCCTGGGGCGAGGCCAGAGTCTTCGCCTCCGTCTCCGCCGACGGCTCCGTCCGAATCTTCGATTTGCGTGACAAAGAGCACTCCACCATCATCTATGAAAGCCCCCACCCCGACACCCCTTTGCTTCGTTTGGCTTGGAACAAGCAGGACCTCAGGTACATGGCTACCATCTTGATGGACAGTAATAAAGTTGTGATCTTGGATATTAGGTCCCCCACTACCCCTGTGGCTGAGTTAGAGAGGCATCGTGGGAGTGTGAATGCCATTGCTTGGGCTCCTCATAGCTCCACGCATATTTGTTCTGCTGGGGATGATACTCAGGCTCTTATCTGGGAATTGCCCACGCTCGCTTCTCCCACTGGGATTGATCCCATGTGCATGTATTCTGCTGGCTGTGAAATCAACCAGCTACAGTGGTCCGCGGCTCAGCCTGATTGGATTGCTATTGCTTTCGCCAACAAGGTGCAGCTTTTGAAAGTTTGA 1011 0.5747 MDNSTQDSHRRSENSVTYESPYPIYAMAFSPSHPHRLALGSFIEEYTNRVHILSFHPDTLSLTPHPSLSFDHPYPPTKLMFHPRKPSPSSSSDLLATSGDYLRLWDVRENSVEPLSLFNNSKTSEFCAPLTSFDWNDIDHNRIGTSSIDTTCTIWDIERTVVETQLIAHDKEVYDIAWGEARVFASVSADGSVRIFDLRDKEHSTIIYESPHPDTPLLRLAWNKQDLRYMATILMDSNKVVILDIRSPTTPVAELERHRGSVNAIAWAPHSSTHICSAGDDTQALIWELPTLASPTGIDPMCMYSAGCEINQLQWSAAQPDWIAIAFANKVQLLKV* 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu9g01274 336 Gene3D - 122 335 IPR015943 GO:0005515
Lapu9g01274 336 ProSiteProfiles Trp-Asp (WD) repeats profile. 255 289 IPR001680 GO:0005515
Lapu9g01274 336 Pfam WD domain, G-beta repeat 166 197 IPR001680 GO:0005515
Lapu9g01274 336 Pfam WD domain, G-beta repeat 251 287 IPR001680 GO:0005515
Lapu9g01274 336 Gene3D - 2 121 IPR015943 GO:0005515
Lapu9g01274 336 ProSiteProfiles Trp-Asp (WD) repeats profile. 166 206 IPR001680 GO:0005515
Lapu9g01274 336 SUPERFAMILY WD40 repeat-like 21 296 IPR036322 GO:0005515
Lapu9g01274 336 ProSitePatterns Trp-Asp (WD) repeats signature. 275 289 IPR019775 -
Lapu9g01274 336 SMART WD40_4 159 197 IPR001680 GO:0005515
Lapu9g01274 336 SMART WD40_4 248 288 IPR001680 GO:0005515
Lapu9g01274 336 SMART WD40_4 63 106 IPR001680 GO:0005515
Lapu9g01274 336 SMART WD40_4 111 156 IPR001680 GO:0005515
Lapu9g01274 336 FunFam WD repeat-containing protein LWD1 11 335 - -
Lapu9g01274 336 PANTHER WD REPEAT CONTAINING PROTEIN 5 336 IPR045159 -
Lapu9g01274 336 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 255 289 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu9g01274 Lapu-Chr9 26744785 26745795 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu9g01274 K11805 - gmx:100804923 651.358
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu9g01274 9 26744785 26745795 Lapu9g01274 9 26744785 26745795 ECH