Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu9g01211 ATGGCGAAGCAGAAACTCAGATACACTTTTTTGGTGCACTTGGTGATTCTCTTCTTCTTTGCTTCCTCTGTTTTGGCTTCAGCAAGAGTTGCGCCTCTTTTACAGAACTACGGGAATCCCATTTTCAGATCAAACTTTCATTCTGTTTACGACACTTCCAAGTACGGTGTGTTTCAGCTGAGTAATGGATTGGCTAAAACACCTCAGATGGGATGGAATAGCTGGAACTTCTTTGCATGCAATATCAGTGAAAGGGTCATTAAGGAAACGGCTGATGCACTGGTATCAACCGGATTGGCTGATTTAGGTTATGTATATGTCAACATAGATGATTGCTGGTCTGCTGTGACAAGAAATCTGAAGGGCCAACTTGTTCCTGATCCTAAGACATTTCCATCTGGAATCAAAGCTCTAGCAGATTATGTACATGGAAAGGGACTCAAACTTGGCATATATTCGGATGCTGGGAGCTTTACATGTCAAGTCCGGCCAGGATCGATTTTCCATGAAACTGATGATGCTGATTTATTTGCCTCTTGGGGTGTAGATTATTTGAAGTATGACAATTGTTACAATCTGGGTATCCCTCCAAAAAAACGTTATCCACCTATGCGTGATGCTCTCAATGCAACTGGGCGTAAAATTTTCTATTCACTCTGTGAATGGGGAGTTGATAACCCCGCCTTGTGGGCAGACAAGGTCGGTAACAGCTGGCGCACAACTGAAGACATCAATGATTCGTGGGCAAGCATGACAACCATTGCTGACCTTAATGATAAGTGGGCTGCATATGCTGGTCCTGGAGGATGGAATGACCCTGATATGTTGGAAGTTGGAAATGGTGGCATGACGTACCAGGAATACCGTGCGCACTTCAGCATCTGGGCTTTAGCAAAGGCACCTCTATTGATTGGCTGTGATGTAAGAAATTTGACTGCTGAAACACTTGAGATTTTGGGCAATGAAGAAGTCATTGCCATCAATCAAGACTCACTTGGAGTCCAGGGAAGGAAAGTTCAAGTTTCTGGAGTAGATGGTTGCAGACAGGTTTGGGCTGGTCCTTTGTCAGGAAACCGATTGGCTGTTGCTCTCTGGAATCGGTGCTCAAAAGTTGCCACTGTAACAGCTTCATGGCAAGCACTTGGGCTTGAATCTGGGGTTCATGTTTCTGTGAGGGATCTGTGGCAGCACAAGGTAGTAAATGAAGATGCAGTGTCATCATTCAGTGCTGGAGTTGATATCCACGACTGTGAACTGTACATTTTCACTCCATTTACAGTTTCTCACTCTGTATAG 1296 0.4437 MAKQKLRYTFLVHLVILFFFASSVLASARVAPLLQNYGNPIFRSNFHSVYDTSKYGVFQLSNGLAKTPQMGWNSWNFFACNISERVIKETADALVSTGLADLGYVYVNIDDCWSAVTRNLKGQLVPDPKTFPSGIKALADYVHGKGLKLGIYSDAGSFTCQVRPGSIFHETDDADLFASWGVDYLKYDNCYNLGIPPKKRYPPMRDALNATGRKIFYSLCEWGVDNPALWADKVGNSWRTTEDINDSWASMTTIADLNDKWAAYAGPGGWNDPDMLEVGNGGMTYQEYRAHFSIWALAKAPLLIGCDVRNLTAETLEILGNEEVIAINQDSLGVQGRKVQVSGVDGCRQVWAGPLSGNRLAVALWNRCSKVATVTASWQALGLESGVHVSVRDLWQHKVVNEDAVSSFSAGVDIHDCELYIFTPFTVSHSV* 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu9g01211 431 PANTHER ALPHA-GALACTOSIDASE/ALPHA-N-ACETYLGALACTOSAMINIDASE 14 424 IPR002241 GO:0004553|GO:0005975
Lapu9g01211 431 CDD GH27 68 330 IPR002241 GO:0004553|GO:0005975
Lapu9g01211 431 ProSitePatterns Alpha-galactosidase signature. 103 119 IPR000111 GO:0004553|GO:0005975
Lapu9g01211 431 FunFam Alpha-galactosidase 333 425 - -
Lapu9g01211 431 Pfam Alpha galactosidase A 67 330 IPR002241 GO:0004553|GO:0005975
Lapu9g01211 431 Pfam Alpha galactosidase C-terminal beta sandwich domain 346 421 IPR041233 -
Lapu9g01211 431 PRINTS Glycosyl hydrolase family 27 signature 200 218 IPR002241 GO:0004553|GO:0005975
Lapu9g01211 431 PRINTS Glycosyl hydrolase family 27 signature 265 284 IPR002241 GO:0004553|GO:0005975
Lapu9g01211 431 PRINTS Glycosyl hydrolase family 27 signature 98 113 IPR002241 GO:0004553|GO:0005975
Lapu9g01211 431 PRINTS Glycosyl hydrolase family 27 signature 62 81 IPR002241 GO:0004553|GO:0005975
Lapu9g01211 431 PRINTS Glycosyl hydrolase family 27 signature 139 160 IPR002241 GO:0004553|GO:0005975
Lapu9g01211 431 PRINTS Glycosyl hydrolase family 27 signature 173 190 IPR002241 GO:0004553|GO:0005975
Lapu9g01211 431 PRINTS Glycosyl hydrolase family 27 signature 286 307 IPR002241 GO:0004553|GO:0005975
Lapu9g01211 431 SUPERFAMILY Glycosyl hydrolase domain 332 425 - -
Lapu9g01211 431 Gene3D - 333 425 IPR013780 -
Lapu9g01211 431 Gene3D Aldolase class I 60 332 IPR013785 -
Lapu9g01211 431 SUPERFAMILY (Trans)glycosidases 60 330 IPR017853 -
Lapu9g01211 431 FunFam Alpha-galactosidase 60 332 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu9g01211 Lapu-Chr9 25892601 25899989 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu9g01211 1 430 Glycoside Hydrolase AT3G56310 70.370 0.0 630
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu9g01211 K07407 - gmx:100784072 832.402