Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu9g01178 ATGGCTTCAACTTTAATCACCACTTTCTCCATGTACTCCGAATCCCAATCAAAGTTCCGCAATTTGCTTGGCCACCCACTAATTCGTAACCGCAACAAACCCACTTCAATTTCGCTTCAGCCAGCTATGGTTCGCGCCCCCCTTTTCTCGACTTTCACTTGCTCCTACGCCCCTTCCACACCCTCCTCGAATTTTTCACCGGGAAGAGCTTTATTCAAGTTCCTCTCAGAAAAGGTGGCATTTTTCCTCATTGGGTCGTTTCTCTTGTCGGGTTGCTTCAGCAAAAGCGCTGCTTTTGCAGAAGCAACGCCTTCTGTGAGTTCTGATGTTGTATCGGAGGAGAAGGTGAAGCCCGCAGAAGAGAAAAATGAGGAAGAGGAAAGCGATGAAGATGAGGAAATGTGGGAGAAGGTTTTGGAGAAGGATCCAAAAAATGTCGAGGCTCTCAAGGTGGTTTTGTATGGGAAGATTAGGAGAGGAAAGTCCAAGGAGGCTGTGAAGTTTGTGGAGGATTTGATTGCTGCGCAGCCGAAGGTGGTTGAGTGGAGGCTTTTGCTTGCACTTTGTTATGAGACAATGGGGCAATTGAGTAAAGCTAAAAGATTGTTCAGGGAAATATTGAAGAGAAGGCCTCTTCTACTCAGAGCTTTGCATGGTTTGGCTATGACAATGCATAAAAACCATGAAGGTCCTGCTGTATTTGAAATGCTAAATAAGGCTCAAGAGTTAGCTTCTCGTGAAAACAGAGTTACTGAGGAGAGAAATATAAGAATCTTAATTGCACAAATGCATACTGTACAGGGTAATTTGGAGGAGGGCTTAAAGAGATTTCAAGAATTGATTGATCAAAATCCTCGAGATTTTAGGCCTTATATTTGCCAGGGAATAATATACAGTCTCTTGGGCAAAACTGACGAAGCTGCACAGCAGTTTGAAACATATCAAACTCTTGTGCCAGAAGAATTTCCTCAGAGGGGATTTCTGGATGATGTTGCCATAGCAGCAAAAAAGACATCCCTGGAAAAGTTTAAGGAAGAATTTAGAAATCAATTTTCTTATAGGAAATAG 1068 0.4298 MASTLITTFSMYSESQSKFRNLLGHPLIRNRNKPTSISLQPAMVRAPLFSTFTCSYAPSTPSSNFSPGRALFKFLSEKVAFFLIGSFLLSGCFSKSAAFAEATPSVSSDVVSEEKVKPAEEKNEEEESDEDEEMWEKVLEKDPKNVEALKVVLYGKIRRGKSKEAVKFVEDLIAAQPKVVEWRLLLALCYETMGQLSKAKRLFREILKRRPLLLRALHGLAMTMHKNHEGPAVFEMLNKAQELASRENRVTEERNIRILIAQMHTVQGNLEEGLKRFQELIDQNPRDFRPYICQGIIYSLLGKTDEAAQQFETYQTLVPEEFPQRGFLDDVAIAAKKTSLEKFKEEFRNQFSYRK* 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu9g01178 355 MobiDBLite consensus disorder prediction 110 133 - -
Lapu9g01178 355 Gene3D Tetratricopeptide repeat domain 93 334 IPR011990 GO:0005515
Lapu9g01178 355 PANTHER TRANSMEMBRANE PROTEIN 217 324 - -
Lapu9g01178 355 ProSiteProfiles TPR repeat profile. 254 287 IPR019734 GO:0005515
Lapu9g01178 355 Pfam Tetratricopeptide repeat 267 319 - -
Lapu9g01178 355 SMART tpr_5 180 213 IPR019734 GO:0005515
Lapu9g01178 355 SMART tpr_5 288 321 IPR019734 GO:0005515
Lapu9g01178 355 SMART tpr_5 254 287 IPR019734 GO:0005515
Lapu9g01178 355 SUPERFAMILY TPR-like 130 320 IPR011990 GO:0005515
Lapu9g01178 355 Pfam Tetratricopeptide repeat 158 212 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu9g01178 Lapu-Chr9 25469140 25473253 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu9g01178 - - gmx:100795327 562.377