Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu9g01121 ATGAAGATAAAATCCCATTCTTCCTTCTTCCTCCTGTTTCTTATAGCCATTACTCACACACATGTTTGCTTAGCTGACTGTGATAACGTGAAGGACTATTGCCATACAAGTACTCAACCCCGAAACCAAGCCATATTCATCAATGGCCTCTCCTGTGAGAACCCAGATAACACAAGCGCCCATGATTTCAAGAGCAATGAACTAAGCAAGCCTGGTTCCAGGAACGATTTTGGTTCATCAGTTAAAATTGTCACTGCTTCCAAGTTTGTGGGGCTCAACACTCTTGGCCTTGCAATTGGTAGAAGTGACATTGAAGTGGATGGGCTTGTGAACCTCCACAATCACCCAGGAGCCACTGAGATGATCTATGTGAGCAAAGGTAGGTTGCAGGCTGCGTTTCTCAACACCCAAAACCAGCTCTTCCAAAAGACTCTCGATGCTGGTGACGTCTTTGTCATCCCCAAGGGCTTGTTCCATTTCTTCCTCAACCGTGGCGAACAAGTTGCAACTTTGTTCTCAGTTTTCAACAGCCAAAACCCTAGGCTAGGATCACTCTCTTCCATACCCTCTGAGTCTGAGAACACACTGGAATCAGTTGAGAAGATCAAGATGAAGCTCAATTCACTCTCTGATTCACAACTTCATGGTCACAGTGATTTGACTTCGGAAGTGCTGGATATCATTTATGACCATTAG 696 0.4483 MKIKSHSSFFLLFLIAITHTHVCLADCDNVKDYCHTSTQPRNQAIFINGLSCENPDNTSAHDFKSNELSKPGSRNDFGSSVKIVTASKFVGLNTLGLAIGRSDIEVDGLVNLHNHPGATEMIYVSKGRLQAAFLNTQNQLFQKTLDAGDVFVIPKGLFHFFLNRGEQVATLFSVFNSQNPRLGSLSSIPSESENTLESVEKIKMKLNSLSDSQLHGHSDLTSEVLDIIYDH* 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu9g01121 231 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 3 MEMBER 3 24 188 - -
Lapu9g01121 231 Gene3D Jelly Rolls 25 210 IPR014710 -
Lapu9g01121 231 ProSitePatterns Germin family signature. 108 121 IPR019780 GO:0030145
Lapu9g01121 231 Pfam Cupin 71 183 IPR006045 -
Lapu9g01121 231 SUPERFAMILY RmlC-like cupins 70 187 IPR011051 -
Lapu9g01121 231 PRINTS Germin signature 143 163 IPR001929 GO:0030145
Lapu9g01121 231 PRINTS Germin signature 113 133 IPR001929 GO:0030145
Lapu9g01121 231 CDD cupin_OxOx 26 187 IPR001929 GO:0030145
Lapu9g01121 231 SMART Cupin_1_3 66 208 IPR006045 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu9g01121 Lapu-Chr9 24250392 24251316 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu9g01121 29 182 Miscellaneous Gene Families AT5G20630 35.897 8.81e-30 108
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu9g01121 - - var:108332215 385.185