Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu9g01120 ATGGAATCCGACAAAACAACCTTTGGCGCTCTGCTCCTGGGCACCTGCACGCGACCCTCCTGGCCCCTCCTGTTTCTCCTTTTCACCCTCGTCACCTTTATCTCCCTCCATCTTCCCGCCAGGCCCGTTTGGCTCCTCGCGGACCCCCAGCCCGGGCCCCATCCCACAACATGCGCCGCCTTCTTCCGCCACGTTCCGCCCAGGAAGGTCGTCATGTCCATCGCGGACTTCGGCGGCGTCGGCGACGGCACCACTTCCAACACTGAATCGTTCCGGAGGGCGATTCAGTACATGCAGCGCTTCCAGAACCGCGGTGGGGGCCAGCTTAATATCCCCGCCGGAACCTGGCTCACCGGCAGTTTCAATCTCACCAGTAATTTCACGCTTTTTCTTCAACACGGTGCCGTTATTCTCGCTTCACAGGACCCGAAAGAATGGCCAATAATTGAGGCATTACCATCTTATGGAAGAGGGAGAGAGAGGCTCGGAGGAAGGCATATTAGCCTTATTCATGGAAATGGCATTAGCAATGTTGTTATTACAGGACAAAATGGGACAGTTGACGGTCAAGGAAAGATGTGGTGGGAACTTTGGTGGAACAGAACATTGGAGCATACTAGAGGGCACCTCCTTGAATTAATGAACTCGGATAATGTTCTCATATCAAACCTCACCTTTCGGAATTCTCCTTTTTGGACCATCCATCCTGTTTACTGCAGAAATGTTGTGATCAAAGGGATGACAATCTTGGCTCCCCTTAATGCTCCAAATACTGATGGCATAGACCCAGACTCTAGTTCCAATGTATGTATTGAAGATAACTACATAGAAAGTGGGGATGATCTTGTTGCCATTAAGAGTGGTTGGGATCAATATGGAATCACCGTGGCCCATCCTTGCACAAATATTATAGTGAGGAGAATATCAGGCACTACCCCCACTTGTTCTGGAGTAGGCATAGGTAGTGAAATGTCTGGCGGAATTTCAAATATCACAATTGAGAATTTGCATGTGTGGGATTCTGCAGCTGGTGTTCGGATAAAATCTGACAAAGGCAGAGGAGGCTATATAGCTAATGTTACTATAAGTGATATAAGAATGGAGAGAGTCAAGATACCCATTAGGTTCAGTAGAGGTTCAAATGACCATCCTGATGATGGGTGGGATCCAAAAGCTGTTCCTAGATTCAAAGATATTTTGATAAGTAATGTGGTCAGTGTAAATTCAACAAAAGCCCCAGTTTTGGAAGGTGTAGAGGGTTCATCATTTGAAGGCTTATGCTTCAAAAATATTACCCTGCATGGTGTATCCTTATCCAAAAGATGGCGTTGTGAATATGTCTCTGGTTTTGCCACCGATGTTTTCCCTGTTCCTTGTCTCGAGTTGCGGAACAATAGCTATTCGTCCCGGTGTTCACCTTCCTGA 1425 0.4758 MESDKTTFGALLLGTCTRPSWPLLFLLFTLVTFISLHLPARPVWLLADPQPGPHPTTCAAFFRHVPPRKVVMSIADFGGVGDGTTSNTESFRRAIQYMQRFQNRGGGQLNIPAGTWLTGSFNLTSNFTLFLQHGAVILASQDPKEWPIIEALPSYGRGRERLGGRHISLIHGNGISNVVITGQNGTVDGQGKMWWELWWNRTLEHTRGHLLELMNSDNVLISNLTFRNSPFWTIHPVYCRNVVIKGMTILAPLNAPNTDGIDPDSSSNVCIEDNYIESGDDLVAIKSGWDQYGITVAHPCTNIIVRRISGTTPTCSGVGIGSEMSGGISNITIENLHVWDSAAGVRIKSDKGRGGYIANVTISDIRMERVKIPIRFSRGSNDHPDDGWDPKAVPRFKDILISNVVSVNSTKAPVLEGVEGSSFEGLCFKNITLHGVSLSKRWRCEYVSGFATDVFPVPCLELRNNSYSSRCSPS* 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu9g01120 474 PANTHER PECTIN LYASE-RELATED 27 469 - -
Lapu9g01120 474 Gene3D - 59 450 IPR012334 -
Lapu9g01120 474 SMART pbh1 357 378 IPR006626 -
Lapu9g01120 474 SMART pbh1 216 238 IPR006626 -
Lapu9g01120 474 SMART pbh1 266 298 IPR006626 -
Lapu9g01120 474 SMART pbh1 328 349 IPR006626 -
Lapu9g01120 474 SMART pbh1 239 265 IPR006626 -
Lapu9g01120 474 SMART pbh1 300 322 IPR006626 -
Lapu9g01120 474 Pfam Glycosyl hydrolases family 28 168 448 IPR000743 GO:0004650|GO:0005975
Lapu9g01120 474 SUPERFAMILY Pectin lyase-like 62 462 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu9g01120 Lapu-Chr9 24245403 24249201 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu9g01120 1 472 Glycoside Hydrolase AT4G33440 66.247 0.0 639
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu9g01120 - - vra:106780727 928.702
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu9g01120 9 24245403 24249201 Lapu9g01120 9 24245403 24249201 ECH