Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu9g01001 ATGAATAATCAAGCTAAGAATGTTGCTGCATCATCTTTGTTTGGTCATTCTGGAATGGCCACACAACCACACCACCCTAACCCCATTCAGCAATGGAACCATTCAGTTTCAACCCCTTTACACTCTCAGTCACAATCACAGTCACATTCACAGTCACGTCCTCAAACACAATTCCCTGGGCTCTTTCAGTTTTCGGAGCCCCAATCTCATGTGCTTGCACAAGCTCAGTATGCACAGGCACAATTGCAGTCTCAGGCTGCACGTGCTCATCCACAATCTCAAACTCAGCCTTTTTCCCACTTGCATGGCGTAAATACTAATGCTGCTAAGGCCAATGGCATATCATCCCCGGCCACCGGAAATGCCAAGCGACCAACCCCAAAGGCCCTGTTGAGGTCTCATAATCCATCCATGCCATTTAAGCCCACGGAATTAACCCCGGGTGGTCGGCAGCAAAAGAAGCCATCATCAGAGAAGGGGACTATGTTTTTGCCTGAGTCTGCTCTGTATACTCGATTACTTGATTTTGAGGCTCAGGTGGATACTGCTTTGGCCAGGAGAAAGTTTGATATCCAGGAGGCTAGGCTCCCTCCCCATGTTCAGAAAATTCTTCGTGTTTATGTGTTCAATACCTTCTCAAATCATGCCAAAATGGACTCTGAGAATAAGAAGACCAATGAATCTTCGTGGTCTCTCAAGATAACTGGAAGAATACTGGAAGATGGTATGGATTCCATGTCTGGAATTTCACAGAGATCGAGTCCTTCGTACCCAAAGTTCTCTGCATTTTTCAAGAAAATTACCATACATTTGGATCAAAGCATTTATCCTGATAATCATGTCATTGTATGGGATAGTGCTCGTTCACCTACCCAACAGGATGGTTTTGAGGTGAAGAGGAAAGGAAACAAAGAATTTACTGCAGTGGTTGCAATAGAAATGAATTATACACCTGAAAAGTTTATGGTTTCACCACACTTGTCTAAACTTTTAGGTATTGAGGTTGAGACTCGTCCAAGAATAATAGCTTCTCTCTTTAACTATGTGAAGTCCAGGAAGTTACAGAGCCCAAATGAGCCTTCGTTCTTCATTTGTGATCCTTCTCTTCAAAGGGTGTTTGGGGAAGAGAAGATGGATTTCACCATGGTTTTTCAGAAGTTAGCACAGCATTTGTCACAACCGCAACCAATACATCTGGAGCATAACATCAAGCTGTCTGGATATTCTCCAGCTGTAACTTCATGTTATGATATACAGGTTGATGTTCCTTTTCCCCTGGAAAAAGACCAGTCTACATTCTTGGCTAGCCTTGAGAGCCAAAAGGAGATTGAAGCTTATGATGAGGCGATCTGTGTTTCCTTAAAGAAGATCCAGGAGCATCGGAAAAGACGGGCTTTCTTTCTTAGCTTTAGTCAGTCTCCAGTAGAGTTTATTGATACTTTGATTACTTCTCAAAGCAAGGATTTGAAACTTGTTGCTGGAGAGGCCAGCCATAACGTTGAAAAGGAACTTCGTTCTGAATTCTACAATCAACCATGGGTCGAGGATGCTGCCATTCGTTACTTGAACCGCAAAACTGCTAGAAGTGATGCTCCTGGGCGCAACTAA 1608 0.4347 MNNQAKNVAASSLFGHSGMATQPHHPNPIQQWNHSVSTPLHSQSQSQSHSQSRPQTQFPGLFQFSEPQSHVLAQAQYAQAQLQSQAARAHPQSQTQPFSHLHGVNTNAAKANGISSPATGNAKRPTPKALLRSHNPSMPFKPTELTPGGRQQKKPSSEKGTMFLPESALYTRLLDFEAQVDTALARRKFDIQEARLPPHVQKILRVYVFNTFSNHAKMDSENKKTNESSWSLKITGRILEDGMDSMSGISQRSSPSYPKFSAFFKKITIHLDQSIYPDNHVIVWDSARSPTQQDGFEVKRKGNKEFTAVVAIEMNYTPEKFMVSPHLSKLLGIEVETRPRIIASLFNYVKSRKLQSPNEPSFFICDPSLQRVFGEEKMDFTMVFQKLAQHLSQPQPIHLEHNIKLSGYSPAVTSCYDIQVDVPFPLEKDQSTFLASLESQKEIEAYDEAICVSLKKIQEHRKRRAFFLSFSQSPVEFIDTLITSQSKDLKLVAGEASHNVEKELRSEFYNQPWVEDAAIRYLNRKTARSDAPGRN* 536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu9g01001 535 SMART swib_2 317 396 IPR019835 -
Lapu9g01001 535 SUPERFAMILY SWIB/MDM2 domain 313 401 IPR036885 -
Lapu9g01001 535 PANTHER SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY D 163 490 - -
Lapu9g01001 535 MobiDBLite consensus disorder prediction 109 161 - -
Lapu9g01001 535 MobiDBLite consensus disorder prediction 16 61 - -
Lapu9g01001 535 Pfam SWIB/MDM2 domain 320 391 IPR003121 -
Lapu9g01001 535 Gene3D SWIB/MDM2 domain 313 398 IPR036885 -
Lapu9g01001 535 CDD SWIB_like 323 391 - -
Lapu9g01001 535 ProSiteProfiles SWIB/MDM2 domain profile. 316 393 IPR003121 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu9g01001 Lapu-Chr9 16063128 16066067 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI/SNF-BAF60b Lapu9g01001 SWIB 1.2e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu9g01001 K11650 - gmx:100784907 842.802
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu9g01001 9 16063128 16066067 Lapu9g01001 9 16063128 16066067 ECH