Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu9g00676 ATGGCGTCGAGTATAGGGATGATGGATAGCGCATACTTTGTCGGCAGAAATGAGATTCTCACTTGGATCAACAATCGCCTTCAACTTAACCTCTCTCGCATTGAGGAGGCTGCATCTGGTGCTGTACAGTGCCAGATGATGGACATGACATATCCAGGGGTTGTTCCAATGCACAAGGTGAATTTTGATGCAAAGACAGAGTATGATATGATTCAGAATTACAAAGTTCTGCAGGATGTTTTCAACAAGCTGAAAATTGAGAAGCATATTGAAGTTGGAAGGCTTGTTAAAGGCCGCCCTTTGGACAACTTGGAGTTCCTTCAATGGCTAAAACGTTATTGTGATTCTATAAATGGAGGCATTATGAATGAGAACTATAATCCTGTTGAGCGTAGGGGTAGTAAGGGTGGAAAGGACCGGAATGTCAAGGGTATAAAGAGCTCAAAATCACTGCAAACAAATCCTATGAATCATTCTGGTTCAGGCGACTCACTCAGGTCCAAGCAATTGAGATCAAGTGGAGGAGCAGACGGGGCTAATGCTTCAGCAGAGATTCAGGCTTTGTCCAAGCAGGTTTCTGATCTGAAATTGTCAGTGGATCACTTGGAAAAAGAAAGAGACTTTTACTTTGCAAAACTAAGGGATATAGAAATTCTTTGTCAGACTTCAGAACTGGAGGATGATCCTATGTCTCTGGCAATTAAGAAGATTTTATATGCAGCTGATGCAAAAGGATCAGCATTAGATGAAGCTCAGGAATACCTTGATGAAGTCATCAATGGTGGTGAAGGTGAAGATGAACCTGAGGTTGAAGCAGAAACCGAAACCTGA 831 0.4224 MASSIGMMDSAYFVGRNEILTWINNRLQLNLSRIEEAASGAVQCQMMDMTYPGVVPMHKVNFDAKTEYDMIQNYKVLQDVFNKLKIEKHIEVGRLVKGRPLDNLEFLQWLKRYCDSINGGIMNENYNPVERRGSKGGKDRNVKGIKSSKSLQTNPMNHSGSGDSLRSKQLRSSGGADGANASAEIQALSKQVSDLKLSVDHLEKERDFYFAKLRDIEILCQTSELEDDPMSLAIKKILYAADAKGSALDEAQEYLDEVINGGEGEDEPEVEAETET* 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu9g00676 276 Gene3D - 177 258 - -
Lapu9g00676 276 Pfam Calponin homology (CH) domain 16 114 IPR001715 GO:0005515
Lapu9g00676 276 SUPERFAMILY Calponin-homology domain, CH-domain 5 132 IPR036872 -
Lapu9g00676 276 Gene3D - 6 134 IPR036872 -
Lapu9g00676 276 Pfam EB1-like C-terminal motif 202 240 IPR004953 GO:0008017
Lapu9g00676 276 MobiDBLite consensus disorder prediction 125 178 - -
Lapu9g00676 276 MobiDBLite consensus disorder prediction 146 176 - -
Lapu9g00676 276 ProSiteProfiles Calponin homology (CH) domain profile. 13 115 IPR001715 GO:0005515
Lapu9g00676 276 ProSiteProfiles EB1-C terminal (EB1-C) domain profile. 177 247 IPR004953 GO:0008017
Lapu9g00676 276 FunFam RP/EB family microtubule-associated protein 6 134 - -
Lapu9g00676 276 MobiDBLite consensus disorder prediction 131 145 - -
Lapu9g00676 276 PANTHER MICROTUBULE-ASSOCIATED PROTEIN RP/EB FAMILY MEMBER 148 263 IPR027328 GO:0008017
Lapu9g00676 276 SUPERFAMILY EB1 dimerisation domain-like 184 243 IPR036133 GO:0008017
Lapu9g00676 276 FunFam Microtubule-associated protein RP/EB family member 1B 183 258 - -
Lapu9g00676 276 Coils Coil 185 205 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu9g00676 Lapu-Chr9 8205939 8212244 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu9g00676 K10436 - gmx:100809691 487.648