Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu9g00656 ATGGCTGACTCAGCTAACTCAGTGCACAACAGTGCCCAAAAATTGGCCGGAAAAGTTGCCATAATCACCGGCGGAGCGAGCGGCATCGGCGAAGAGACGGCGCGTCTGTTTGCCAAGCATGGTGCGCGAATGGTGGTGATTGCAGACATCCAAGATGATCTGGGCAACCAAGTGGCAGCATCCATTGGCTCTCACAGGTGCACCTATGTCCGTTGTGACGTGAGAGCGGAAGAGCAAGTGAAAGACCTCGTGGATTCAACGGTCAACGCTTACGGCCAATTGGACGTGATGTTCAGCAACGCCGGCATCATTAGTCCCTCCGACCAGACGATCCTCGACCTCGACTTTTCCCAATTTGACCGTCTCTTCACCGTCAATGCGAGGGGCATGGCGGCGTGTGTGAAGCACGCCGCCCGCTCCATGGTGGAGCGGCGCGTGAGGGGCAGCATCGTATGCACGGCGAGCGTGGCGGCGTCGCACGGCAGCGCGTTGCGCACGGACTACGTGATGTCGAAGCACGCGGTGAAGGGGCTGGTGCGTTGCGCGAGTGTGCAGCTGGGGGCGCACGGTATCAGAGTGAACTGCGTCTCACCGAGTGGGTTGGCCACGCCGTTGACGCGTGCGGCGCACGCGACGTTGGAGATCGAAGAGTTGCAGAAACTGTATGCGCAGAGTTCCAGGCTGAAAGGCGTTGTTTTGAGCGCCAAACATGTTGCGGATGCGGTGCTGTTTCTCGCGTCCGGTGACTCGGAGTTTGTAACCGGACACGATCTTGGGGTGGACGGTGGTTTTGAGCTTTGA 801 0.5905 MADSANSVHNSAQKLAGKVAIITGGASGIGEETARLFAKHGARMVVIADIQDDLGNQVAASIGSHRCTYVRCDVRAEEQVKDLVDSTVNAYGQLDVMFSNAGIISPSDQTILDLDFSQFDRLFTVNARGMAACVKHAARSMVERRVRGSIVCTASVAASHGSALRTDYVMSKHAVKGLVRCASVQLGAHGIRVNCVSPSGLATPLTRAAHATLEIEELQKLYAQSSRLKGVVLSAKHVADAVLFLASGDSEFVTGHDLGVDGGFEL* 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu9g00656 266 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 155 183 IPR020904 GO:0016491
Lapu9g00656 266 FunFam Short-chain dehydrogenase reductase 5 266 - -
Lapu9g00656 266 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 148 156 IPR002347 -
Lapu9g00656 266 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 168 187 IPR002347 -
Lapu9g00656 266 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 92 103 IPR002347 -
Lapu9g00656 266 PRINTS Glucose/ribitol dehydrogenase family signature 168 187 IPR002347 -
Lapu9g00656 266 PRINTS Glucose/ribitol dehydrogenase family signature 189 206 IPR002347 -
Lapu9g00656 266 PRINTS Glucose/ribitol dehydrogenase family signature 92 103 IPR002347 -
Lapu9g00656 266 PRINTS Glucose/ribitol dehydrogenase family signature 19 36 IPR002347 -
Lapu9g00656 266 PRINTS Glucose/ribitol dehydrogenase family signature 142 158 IPR002347 -
Lapu9g00656 266 PRINTS Glucose/ribitol dehydrogenase family signature 228 248 IPR002347 -
Lapu9g00656 266 Pfam Enoyl-(Acyl carrier protein) reductase 24 264 - -
Lapu9g00656 266 Gene3D - 4 265 - -
Lapu9g00656 266 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 17 264 IPR036291 -
Lapu9g00656 266 PANTHER SHORT-CHAIN DEHYDROGENASE REDUCTASE 12 265 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu9g00656 Lapu-Chr9 7815388 7816387 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu9g00656 14 266 Acyl Lipid Metabolism Gene Families AT1G63380 27.586 5.51e-21 88.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu9g00656 - - gmx:100817513 440.269
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu9g00656 9 7815388 7816387 Lapu9g00656 9 7815388 7816387 ECH