Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu9g00392 ATGAAGATAATTCTAACCATCTTCTTCAGTTTATCCCTGCTCTCTCTCTCCCACGCTTCTGTGGTAGATTTCTGTGTGGCAGATTACACAGCTCCCAATGGCCCTGCAGGGTACTCATGCAAGAAGCCTGCAAAGGTGACAGCGGATGACTTTGCCTATTCTGGCCTTGGCACTGCTGGCAACACCTCAAACATCATCAAAGCTGCAGTGACTCCTGCATTTGATGCTCAATTCCCTGGTGTCAATGGCCTTGGCATTTCTGTTGCACGTTTGGACTTGGCACCTGGCGGGGTTATCCCACTCCATACACACCCTGGAGCCTCAGAGCTGTTGGTTGTTGTGGAGGGTCAAATCTGTGCTGGCTTCGTTGATTCTAGCAACACTGTGTACCTCAAAACCCTCGAAAAGGGTGATATCATGGTGTTCCCTCAGGGCTTGTTGCACTTCCAAATCAACTCTGGTGACTCTCAGGCTTTAGCTTTTGTGAGCTTCAGCAGTGCCAACCCTGGCCTCCAGATTCTCGACTTTGCTTTGTTCAAGAGTGACTTCCCCACTGAACTCATCACGCAAACCACTTTCATTGATGCTGCGGTGGTCAAGAAGCTGAAGGGTGTTCTTGGAGGGTCAGGTTAA 633 0.4976 MKIILTIFFSLSLLSLSHASVVDFCVADYTAPNGPAGYSCKKPAKVTADDFAYSGLGTAGNTSNIIKAAVTPAFDAQFPGVNGLGISVARLDLAPGGVIPLHTHPGASELLVVVEGQICAGFVDSSNTVYLKTLEKGDIMVFPQGLLHFQINSGDSQALAFVSFSSANPGLQILDFALFKSDFPTELITQTTFIDAAVVKKLKGVLGGSG* 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu9g00392 210 PRINTS Germin signature 102 122 IPR001929 GO:0030145
Lapu9g00392 210 PRINTS Germin signature 132 152 IPR001929 GO:0030145
Lapu9g00392 210 PRINTS Germin signature 165 180 IPR001929 GO:0030145
Lapu9g00392 210 ProSitePatterns Germin family signature. 97 110 IPR019780 GO:0030145
Lapu9g00392 210 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 3 MEMBER 3 16 203 - -
Lapu9g00392 210 Gene3D Jelly Rolls 18 209 IPR014710 -
Lapu9g00392 210 FunFam Auxin-binding protein ABP19a 18 209 - -
Lapu9g00392 210 SUPERFAMILY RmlC-like cupins 21 204 IPR011051 -
Lapu9g00392 210 CDD cupin_OxOx 18 206 IPR001929 GO:0030145
Lapu9g00392 210 SMART Cupin_1_3 54 200 IPR006045 -
Lapu9g00392 210 Pfam Cupin 55 198 IPR006045 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu9g00392 Lapu-Chr9 4150765 4151746 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu9g00392 1 209 Miscellaneous Gene Families AT5G20630 69.524 5.35e-104 297
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu9g00392 - - gmx:100806553 342.043