Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu9g00298 ATGGATCACCATGAGGATGAAAGTAACAGCAAACAGGACGATGAGGAAGCTGTTGCTCGTCTTGAGGAAATAAAAAAATCTGTTGAGGCGAAGATGATTTTACGACAAAGCAATTTGAATCCTGAAAGGCCTGACTCAGGATTCTTAAGGACATTGGATTCCAGCATCAAGCGTAACACTGCAGTTATTAAGAAGCTGAAGCAGATCAATGAGGAGCAGCGTGAATCTCTGATGGATGAGTTGCGAAGTGTCAACTTAAGCAAATTTGTCAGTGAAGCCGTGACTGCAATATGTGATGCCAAACTTAGAAGTTCTGATATACAAGCTGCAGTTCAGATCTCTTCGTTGCTTCATCAAAGGTACAAGGACTTTGCGCCAAGCCTTATTCAAGGGCTTCTCAAAATCTTCTCTCCTGGAAAACTTGGCGATGAATCAGATGCTGATAGAAACCTGAAGGCAATGAAGAAGCGCAGCACCCTGAAATTTCTATTGGAACTTTTTTTTGTTGGAGTTATTGAAGATGGTGGTATTTTTATAAATATCATAAAAGATCTTACCAATGGGGAACAGCTGAAAGATCGGGATGCTGCACAAACAAGTTTGACCCTTCTTTCTAGTTTTGCTCGTCAGGGGAGAATTTTTCTTGGTCTCTCTGTTAGTGGGCCAGAAATCCATGAAGAGTTTTTTAAAGGCCTCAACATCACAGCAGACCAGAAGAAAGTTTTCCGGAAAGCATGCTATTCCTTTTATGATGCAGCAGCGGAACTGCTTCAGTCTGAGCATTCTTCACTTCGATTAATGGAGCATGAAAATTCCAAGATTTTGAATGCAAAAGGAGAGCTCAGTGATGAAAATATTGCCTCATATGAAAAGCTTCGCAAATCCTATGACCATTTGTACCGAAATGTTTCATCATTAGCAGAAGCACTTGATATGCAGCCTCCTGTAATGCCAGAGGATGGACACACAACTAGGGTTACCAGTGGTGAGGAGGGTATTTCTGCTGCTTCGGGTAAAGATTCTTCTGTTGTTGAGCCCATATGGGATGATGAAGATACAAGGACTTTCTATGAATGTTTACCTGATCTTAGAGCGTTTGTTCCTGCTGTGCTTTTGGGAGAAACAGAGCCAAAAAGCAGTGAGCAATCTGCAAAGAGTCAGGACCAACCAACTGAAATATTACCTGAATCAGACAAAGGTCAACAGACCACCCATGAAAGTGGAGAGATCTCTACAGAGTCTAATGCTTTGCCAGAGGCAGAAAGCACAGAAAGAGGGAAGGATAAGGAAGAAAAAGAAAAGTCTAAAGAATTGGACAGAGAGAAGGAAAAAGAAAAAGATAATGATAGAAAGGGAGAAAATGAGAAAGACAAACTCAGGAGTCTTGAAGGGACAAATTTGGATGCTTTACTGCAGAGGCTTCCAGGTTGTGTGAGCCGGGACCTTATAGATCAATTAACTGTCGAGTTCTGTTATCTAAACTCAAAATCGAATCGGAAAAAGCTTGTGAGGGCTTTGTTCAATGTACCAAGGACATCTCTGGAACTGCTAGCATATTATTCACGCATGGTTGCTACACTCTCAACTTGTATGAAGGATGTCTCCTCCATTCTGTTACAGATGTTGGAGGAGGAATTCAATTTCTTAATAAATAAAAAGGATCAGATGAACATTGAGACAAAGATAAGGAACATAAGGTTCATTGGAGAACTTTGCAAGTTCAAAATTGCCTCTCCTGGCCTAGTCTTTAGTTGTTTGAAGGCCTGTTTAGATGATTTTACACATCACAACATTGATGTAGCTTGCAATCTTCTTGAAACATGTGGCCGTTTTCTGTATCGATCTCCAGAAACTACTATACGAATGGCTAACATGTTGGAGATACTGATGCGCTTGAAAAATGTAAAAAATTTGGATCCGAGACATAGCACTTTAGTGGAAAATGCATACTACCTTTGCAAACCACCAGAAAGATCTGCACGGGTAGCTAAAGTTCGTCCACCATTGCATCAGTATATCAGAAAATTACTTTTCTCGGATCTTGACAAGTCTACCATTGAGCATGTGCTGAGGCAACTACGTAAATTGCCGTGGAATGAATGTGAGACATATCTTTTGAAATGCTTCATGAAGGTCTACAAAGGAAAATATGGTCAGATCCATCTGATTGCTTCACTTGCTGCTGGATTAAGTCGCTATCATGATGAGTTTGCTGTAGCTATTGTTGATGAGGTTCTGGAGGAGATTAGAATTGGGCTGGAGTTAAATGACTACGGGATGCAGCAAAGACGCATAGCTTACATGCGATTCTTAGGGGAGCTTTACAACTATAAGCATGTAGACTCTTCTGTTATTTTTGAGACACTATATCTCATTCTCATCTATGGTCATGGGACATCAGAGCAAGATGTACTTGATCCACCTGAAGACTGTTTTCGCATAAGGTTGATCGTTACTCTACTTGAAACTTGTGGGCATTACTTTGATCATGGCTCTTCTAAGAAGAAACTTGATCGGTTCCTAATTCACTTCCAGAGGTATGTTTTAAGCAAAGGGGCACTGCCTCTGGACATCGAATTTGACTTACAGGATCTATTTGCAGACTTGCGTCCCAATATGGTCCGTTACACTTCTATTGAGGAAGTGAATGCAGCTCTAGTAGAACTTGAGGAACATGATCAGATAGCTTCTGCTGATAAGGCCAGTAGTGAAAAACATTCTGACACTGAGAAGCCTTCGAGTAGGACCATTTCCACTACTACTGTGGTTGGCAATGGACAGAGCATTGATAATGGTAAGGAGGAAAATGGAGTGCAGGATGATGTTAATGATAGTGAGACTGATTCAGGGAGTGACACAATGGATGTAGAGGGTCATGATGATGAAGAGTTGGATGAGGAGAATCATGATGATGGGTGTGAAACTGAAGATGATGAAGATGATGATGACGATGGGCCTGGACCTGGTTCCGATGAGGAGGATGAAGTGCATGTGAGACAAAAAGTGACCGAGGTGGACCCTTTGGAAGAAGCTGATTTCGATCAGGAGCTCAAAGCTGTAGTGCAGGAGAGTATGGAACAGCGGCGACAGGAGCTACGGGGTCGTCCTACATTGAACATGATGATTCCAATGAATGTATTTGAGGGATCTACCAAGGATCACCATGGGAGGGGAGTTGGTGGGGAAAGTGGTGACGAGGCACTGGATGAGGATACTGGCGGAAACAAAGAGGTTCAGGTGAAAGTTCTTGTGAAGCGTGGAAACAAGCAGCAAACAAAGCAGATGTTCATCCCACGGAATTCCTCACTGGTGCAGAGTACAAAACAGAAAGAAGCAGCAGAGCTTCAAGAGAAAGAAGACATCAAGAGGCTTGTTTTAGAGTATAATGACAGAGAAGAGGAGGAGCTTAATGGATTAGGGACCCAGCCGGCAAACTGGATGCAGAGTGTAGGTAACAAGACCGGTGGCCGTGGCAGCACTTTGGAAGGAAACAGTGGCAGGGGTAGTGGATCAAGACATCGGCATCATAATTATTCTGGCAGTGGAATATATTATAGCAGAAGAAAGTAA 3570 0.4227 MDHHEDESNSKQDDEEAVARLEEIKKSVEAKMILRQSNLNPERPDSGFLRTLDSSIKRNTAVIKKLKQINEEQRESLMDELRSVNLSKFVSEAVTAICDAKLRSSDIQAAVQISSLLHQRYKDFAPSLIQGLLKIFSPGKLGDESDADRNLKAMKKRSTLKFLLELFFVGVIEDGGIFINIIKDLTNGEQLKDRDAAQTSLTLLSSFARQGRIFLGLSVSGPEIHEEFFKGLNITADQKKVFRKACYSFYDAAAELLQSEHSSLRLMEHENSKILNAKGELSDENIASYEKLRKSYDHLYRNVSSLAEALDMQPPVMPEDGHTTRVTSGEEGISAASGKDSSVVEPIWDDEDTRTFYECLPDLRAFVPAVLLGETEPKSSEQSAKSQDQPTEILPESDKGQQTTHESGEISTESNALPEAESTERGKDKEEKEKSKELDREKEKEKDNDRKGENEKDKLRSLEGTNLDALLQRLPGCVSRDLIDQLTVEFCYLNSKSNRKKLVRALFNVPRTSLELLAYYSRMVATLSTCMKDVSSILLQMLEEEFNFLINKKDQMNIETKIRNIRFIGELCKFKIASPGLVFSCLKACLDDFTHHNIDVACNLLETCGRFLYRSPETTIRMANMLEILMRLKNVKNLDPRHSTLVENAYYLCKPPERSARVAKVRPPLHQYIRKLLFSDLDKSTIEHVLRQLRKLPWNECETYLLKCFMKVYKGKYGQIHLIASLAAGLSRYHDEFAVAIVDEVLEEIRIGLELNDYGMQQRRIAYMRFLGELYNYKHVDSSVIFETLYLILIYGHGTSEQDVLDPPEDCFRIRLIVTLLETCGHYFDHGSSKKKLDRFLIHFQRYVLSKGALPLDIEFDLQDLFADLRPNMVRYTSIEEVNAALVELEEHDQIASADKASSEKHSDTEKPSSRTISTTTVVGNGQSIDNGKEENGVQDDVNDSETDSGSDTMDVEGHDDEELDEENHDDGCETEDDEDDDDDGPGPGSDEEDEVHVRQKVTEVDPLEEADFDQELKAVVQESMEQRRQELRGRPTLNMMIPMNVFEGSTKDHHGRGVGGESGDEALDEDTGGNKEVQVKVLVKRGNKQQTKQMFIPRNSSLVQSTKQKEAAELQEKEDIKRLVLEYNDREEEELNGLGTQPANWMQSVGNKTGGRGSTLEGNSGRGSGSRHRHHNYSGSGIYYSRRK* 1190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu9g00298 1189 MobiDBLite consensus disorder prediction 1134 1189 - -
Lapu9g00298 1189 MobiDBLite consensus disorder prediction 895 1077 - -
Lapu9g00298 1189 FunFam Regulator of nonsense transcripts UPF2 426 664 - -
Lapu9g00298 1189 Gene3D - 424 666 - -
Lapu9g00298 1189 SUPERFAMILY ARM repeat 666 891 IPR016024 -
Lapu9g00298 1189 Gene3D - 667 896 - -
Lapu9g00298 1189 MobiDBLite consensus disorder prediction 913 933 - -
Lapu9g00298 1189 Coils Coil 539 559 - -
Lapu9g00298 1189 Pfam Up-frameshift suppressor 2 991 1127 IPR007193 -
Lapu9g00298 1189 MobiDBLite consensus disorder prediction 895 912 - -
Lapu9g00298 1189 MobiDBLite consensus disorder prediction 420 459 - -
Lapu9g00298 1189 FunFam Regulator of nonsense transcripts UPF2 8 318 - -
Lapu9g00298 1189 Pfam MIF4G domain 673 867 IPR003890 GO:0003723|GO:0005515
Lapu9g00298 1189 Pfam MIF4G domain 471 655 IPR003890 GO:0003723|GO:0005515
Lapu9g00298 1189 PANTHER NONSENSE-MEDIATED MRNA DECAY PROTEIN 2 UP-FRAMESHIFT SUPPRESSOR 2 13 1137 IPR039762 GO:0000184
Lapu9g00298 1189 Gene3D - 8 318 - -
Lapu9g00298 1189 SMART if4_15 56 278 IPR003890 GO:0003723|GO:0005515
Lapu9g00298 1189 SMART if4_15 468 656 IPR003890 GO:0003723|GO:0005515
Lapu9g00298 1189 SMART if4_15 671 872 IPR003890 GO:0003723|GO:0005515
Lapu9g00298 1189 MobiDBLite consensus disorder prediction 991 1033 - -
Lapu9g00298 1189 MobiDBLite consensus disorder prediction 375 459 - -
Lapu9g00298 1189 MobiDBLite consensus disorder prediction 1141 1167 - -
Lapu9g00298 1189 SUPERFAMILY ARM repeat 72 188 IPR016024 -
Lapu9g00298 1189 MobiDBLite consensus disorder prediction 376 419 - -
Lapu9g00298 1189 Coils Coil 427 448 - -
Lapu9g00298 1189 Coils Coil 11 31 - -
Lapu9g00298 1189 SUPERFAMILY ARM repeat 465 659 IPR016024 -
Lapu9g00298 1189 MobiDBLite consensus disorder prediction 941 990 - -
Lapu9g00298 1189 FunFam Regulator of nonsense transcripts UPF2 667 897 - -
Lapu9g00298 1189 MobiDBLite consensus disorder prediction 310 341 - -
Lapu9g00298 1189 MobiDBLite consensus disorder prediction 1050 1076 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu9g00298 Lapu-Chr9 2961306 2980549 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu9g00298 K14327 - gmx:100786092 2115.89