Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu9g00272 ATGGGGAAGAAAAAGAAGCAGGTAGGAGAAACGAGTGAAGATAGAGGAGATCATAAGAAAGCAGAAGATGAAAGCCCCAGATCATATGACAACGATACTTTGGTGTTTATATCAATGGCTCAAGAGTTAAAGGATGAAGGGAACAAGCTGTTCCAGAAGCGGAATGCTAAGGGGGCTTTGGTAAAATATGAGAAGGCCCTGAAATTGCTTCCAAGAAATCATGTAGATATTTCTTATTTGAGGAGTAACATGGCTGCGTGCTACATGCAGATGGGTCTCTGTGAGTATCCTAGAGCAATTAATGAATGCAATTTGGCTCTCGAAGTAACACCAAAATATAGTAAAGCTCTGATGAAGAGGGCAAGGTGCTATGAAGCTTTAAATAGGCTGGATTTTGCACTGAGAGATGTTAGTACTGTTTTGAAGATAGAGCCAAATAATGTAATGGCATTGGAGGTCTCGGATAAGGTGAAGCATGCTCTTGAAGATCGGGGATTAGTAGTAAATGATACAGAAATTGAGTTGCCTCCAGACTATGTTGAACCTCCTGCTTTATCTCTGCAGAAAGTAGTGAAAGACAAGATTCACAAGAAGAAGAAAAACAAAGAGAAGGTGAAGTCTCCTGATAAAATTGAAGAAAAGCAAACTGAGGAGAAATTAGAAGAGAATAAAGCTGAGGATAGCAGTGTAGGAAAGAAGGCCGAGGACGGTCGGAAAGAGAAGAAGGCTAACAAATCTAAAAAGAAGAAGGCCAAGGAAAAAAATGTTGAGAAAAAGGATGATGTTAAGGAAGTTATTGAGGAAAAAAGTAATGGTAGAAGTGAAGATATACCTAAGAAAGCAGCAAAACTTGTTTTTGGTGAGGATATAAGATGGGCTGAATTGCCAGTTAATTGCAGCCTCTTTCAGCTAAGGGAAGTTATTTGTGATCGTTTCCCTAGACTAGGAGCAGTTCTTGTCAAATATAAGGACCAAGAGGGTGATCTGGTCACTATCACTTCTGATGAAGAATTAAGGTGGGCTGAAACAGGATCACAGGGTTCTATCCGGCTGTACATAGTGGAAGCTAATCCTGAACATGATCCACTCTTTCAGAAGCTTAATGCAAAGAATGGAGAAAAGGTTAGTATTGCTAATTCTCCTGTGAATGGATCTGTGGTGAAAGCAAAGGACATTATTAGCTCATCTTGCATTGAGGATTGGATAATTCTGTTTGCACAACAGTTCAAGACCCATGTTGGGTTGGAATCTGACAGATATTTAGATTTTCATGAATTTGGTATGAAGCTCTATTCAGAGGCTGTGGAGGAGACAATTACAAGTGAGGAAGCTCAAGGCCCATTTGATGTTGCCGGAGATAAGTTCCAAGAGATGGCAGCTCTAGCATTGTTCAACTGGGGAAATGTGCATATGTCCAGGGCAAGGAACAAAGTTTATTTTACAGGAGATTCTTCTAAGGAGCATTTGCATGAACAAATCAGAAGTTTGTATGAATGGGCACACGAAGAATATGAAAAAGCTGGGGAGAAGTATGAAACAGCCATTGAAATTAAACCAGATTTTTATGAAGGCTTCATGGCACTAGGCCAACAGCTGTTTGAGCAAGCCAAACTTTCTTGGAATTATGCACTCTGTTCTAAGGTAGATTTCTCTACATGGTCCTCCGCTGAGGTTCTTCAGCTTTACAACAGTGCCGAGGATAGTGTGGAGAAAGGAATGCTTATATGGGAAGAATTAGGAGAGCAGCAGTTGCAGGAAACTTCGAATCCGAATAATATTTTATTACATTTGCAGAACATGGGGTTGGACCAATTATTCAAAAATATGTCAGCAGATGAAATTGCTACACAGGTGGCACATACGAGGTCTCAAATGAATCTTCTGTGGGGTACCATACTATACGAGCGCTCGATAGTGGAATTCAAATTAGGGCTGCCGGGATGGAATGAAAGTCTGGAAGTTGCAGCTGAGAAGTTTCAACTTGCTGGAGCTTCTGCAACAGATGTAGCTCTAATGTTGAAGAACCACTGTTCAAATAACTCTGTTGTAGACGGTGTGGGATTCAAAATTGATGAAATAGTCCGAGCGTGGAATGAGATGTACAATGCTGAAGAGTTGCGGAAAGGTGTTCCATCATTCCGTTTGGAGCCCTTGTTTAGAAGAAGAATATCTAAAATATACCATGCCTTTGAGCTTGTATAA 2202 0.4051 MGKKKKQVGETSEDRGDHKKAEDESPRSYDNDTLVFISMAQELKDEGNKLFQKRNAKGALVKYEKALKLLPRNHVDISYLRSNMAACYMQMGLCEYPRAINECNLALEVTPKYSKALMKRARCYEALNRLDFALRDVSTVLKIEPNNVMALEVSDKVKHALEDRGLVVNDTEIELPPDYVEPPALSLQKVVKDKIHKKKKNKEKVKSPDKIEEKQTEEKLEENKAEDSSVGKKAEDGRKEKKANKSKKKKAKEKNVEKKDDVKEVIEEKSNGRSEDIPKKAAKLVFGEDIRWAELPVNCSLFQLREVICDRFPRLGAVLVKYKDQEGDLVTITSDEELRWAETGSQGSIRLYIVEANPEHDPLFQKLNAKNGEKVSIANSPVNGSVVKAKDIISSSCIEDWIILFAQQFKTHVGLESDRYLDFHEFGMKLYSEAVEETITSEEAQGPFDVAGDKFQEMAALALFNWGNVHMSRARNKVYFTGDSSKEHLHEQIRSLYEWAHEEYEKAGEKYETAIEIKPDFYEGFMALGQQLFEQAKLSWNYALCSKVDFSTWSSAEVLQLYNSAEDSVEKGMLIWEELGEQQLQETSNPNNILLHLQNMGLDQLFKNMSADEIATQVAHTRSQMNLLWGTILYERSIVEFKLGLPGWNESLEVAAEKFQLAGASATDVALMLKNHCSNNSVVDGVGFKIDEIVRAWNEMYNAEELRKGVPSFRLEPLFRRRISKIYHAFELV* 734
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu9g00272 733 SUPERFAMILY CAD & PB1 domains 282 365 - -
Lapu9g00272 733 SUPERFAMILY TPR-like 40 537 IPR011990 GO:0005515
Lapu9g00272 733 MobiDBLite consensus disorder prediction 196 261 - -
Lapu9g00272 733 Pfam PB1 domain 283 354 IPR000270 GO:0005515
Lapu9g00272 733 SMART tpr_5 40 73 IPR019734 GO:0005515
Lapu9g00272 733 SMART tpr_5 78 113 IPR019734 GO:0005515
Lapu9g00272 733 SMART tpr_5 114 147 IPR019734 GO:0005515
Lapu9g00272 733 PANTHER PROTEIN CLMP1 3 731 IPR044517 -
Lapu9g00272 733 Coils Coil 248 268 - -
Lapu9g00272 733 Gene3D - 275 356 - -
Lapu9g00272 733 SMART PB1_new 279 356 IPR000270 GO:0005515
Lapu9g00272 733 ProSiteProfiles TPR repeat profile. 114 147 IPR019734 GO:0005515
Lapu9g00272 733 ProSiteProfiles PB1 domain profile. 279 356 IPR000270 GO:0005515
Lapu9g00272 733 MobiDBLite consensus disorder prediction 205 242 - -
Lapu9g00272 733 Gene3D Tetratricopeptide repeat domain 37 167 IPR011990 GO:0005515
Lapu9g00272 733 MobiDBLite consensus disorder prediction 1 28 - -
Lapu9g00272 733 ProSiteProfiles TPR repeat profile. 40 73 IPR019734 GO:0005515
Lapu9g00272 733 CDD PB1 287 353 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu9g00272 Lapu-Chr9 2653374 2661021 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu9g00272 23 147 Calmodulin-binding Proteins AT3G25230 32.117 1.11e-08 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu9g00272 K26538 - gmx:100820306 1169.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu9g00272 9 2653374 2661021 Lapu9g00272 9 2653374 2661021 ECH
Lapu3g00775 3 8167230 8172321 Lapu9g00272 9 2653374 2661021 PCT