Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g00775 ATGGGAAAGAAAACGAGGCAAGTAGGAGAAATAAGGGAGGATAGTAAAGTGCGAGATAGCAGCCCCAGAGCATATGATAACGATACAATGGTGTTTATATCCATGTCTCAAGAATTGAAGAATGAGGGGAACAAGCTGTTCCAAAAGAGGGATCTAGAAGGAGCTATACTAAAATATGAGAAAGCCCTCAAGTTGCTTCCCAGAAATCATATTGATGTGTCCTATCTGCGCAGCAACGTGGCTGCATGTTATATGCAGATGGGGGTCAGTGAGTTGCCAAGGGCTATTCATGAGTGTGATTTGGCTCTTGAAGTGACACCGAAATATAGTAAAGCACTGTTGAAGAGGGCAAGGTGCTACGAGGCTTTAAATAGGCTGGATTTGGCTCTAAGAGATGTCAGTACTGTTCTGAAGACGGAGCCAAATAATGTCATGGCATTAGAGATCTCAGAAAAGGTGAAAAATGCACTTGAGGAGAAAGGATTGAGAGTTAACGATACAATAATTGAGTTGCCTCCAGATTATGTAGAATCTCATAGTGCTTTGACTCCAGAAAAGGTAGTGAAAGAGAATATGCGCAAGAAGAAGGGCTATAAAGAGGAAAAGAAGGCTCCTGGTGACAAAATTCTTGAAAGACAAACCGAGGAGAAATTAGAGGAGAAGGCTGAGGGCAGTATTGTGCTCGTTGAGAAGAAGATCTCCAAGAAGAAGAAGGCCAAGGAAAAAATTGATGAGAAGAAGGCTGATATAAAGGAAGTTATAGAGGAAAGAAGTAGTGGTAGAAGGGAACACGTTCCTAACAAAACAGTTAAACTTATTTTTGGTGATGATATAAGATGTGCTGAACTGCCTATCAATTTTAGCCTCTTCCAGTTAAGGGAAGTTATTCAGGATCGATTCTCGAGCCTAGGAGCTGTTCTTGTCAAATACAGGGACCAAGAAGGTGATTTAGTCACAATCACTTCTGATGATGAATTAAGATGGGCTGAAACAGGAACTAATAGTTCTATCCGACTGTACATAGTAGAAGCCACTCCTGAGCATGATCCACTTTTTGAGAAATTTAAAGTGAAGGAGGCGGAAGTGGTTGGCATTAACATTGCACTTGAGAATGGTTGTGTGGGAAAAGCAAATGAAATTGTTAGCTCTTCTTGCATTGAGGATTGGATAATTCAGTTTGCCAAACTGTTCAAGAACCATGTTGGTTTTGAATCTGAAAGATATTTGGATTTTCACGAGCATGGTATGAAGCTCTATTCTGAGGCTCTGGAGGATACGGTTACAAGCGAAGAAGCACAAGGCCTATTTGACATGGCAGGAGATAAGTTCCAAGAGATGACTGCTCTTGCATTGTTCAACTGGGGAAATGTGCATATGTCTAAGGCAAGGAAAAAGGTATATAAAGCAGAAGAATCTTCCAAAGAGCACCTATGCGAGCTGATAAAAAATTCGTATGAATGGGCTCTGGAAGAATATTTAAAAGCAGGAGAAAAATATGATGCAGCCATTAAAATTAAGTCAGATTTTCATGAAGGCTTCTTGGCGCTGGGGCTGCAGCAGTTTGAGCAAGCAAAACTTTCGTGGTATCATGCGCTCAGTAGTAATGTAGACTTGTTAACATGGCCTTCCGCTGAGGTTCTTCATCTCTACAACAATTCTGAAGAAAATATGGAGAAAGGAATGCAGATATGGGAAGAATCTCAAAAGCAGAACTTGAGTAAAACGTCTAATTCAAATTATGATAGATTGGATTTGCAGAACGCGGGGTTGGATGGGCTTTTTAAAAATATTTCCTCAGATGAACTTGCAGGACAGGAGGCACATATGAGGTCTCAAATAAATCTCCTATGGGGTACCATGCTATATGAACGCTCAATTGTGGAGTTCAAATTAGGGCTACCTACATGGCATGAAACTCTTGCGGTTTCAGTTGAGAAATTTGAACTTGCTGGAGCTTCTCCAACTGATATAGCTGTCATTTTGAAGAACCACTGTTCAAATAATACTGCAGTAGACGGTCTTGCCTTCAAAATTGATGAAATAGTACAGGCATGGAATGAGATGTACAAAGCTAAAAAGTGGAAAAGTGGAGTTCCATCATTTCGTTTGGAACCCTTATTTAGAAGGCGAGTTTCAAAAACTTATCATGCCTTTGAGCTTGCATGA 2166 0.4049 MGKKTRQVGEIREDSKVRDSSPRAYDNDTMVFISMSQELKNEGNKLFQKRDLEGAILKYEKALKLLPRNHIDVSYLRSNVAACYMQMGVSELPRAIHECDLALEVTPKYSKALLKRARCYEALNRLDLALRDVSTVLKTEPNNVMALEISEKVKNALEEKGLRVNDTIIELPPDYVESHSALTPEKVVKENMRKKKGYKEEKKAPGDKILERQTEEKLEEKAEGSIVLVEKKISKKKKAKEKIDEKKADIKEVIEERSSGRREHVPNKTVKLIFGDDIRCAELPINFSLFQLREVIQDRFSSLGAVLVKYRDQEGDLVTITSDDELRWAETGTNSSIRLYIVEATPEHDPLFEKFKVKEAEVVGINIALENGCVGKANEIVSSSCIEDWIIQFAKLFKNHVGFESERYLDFHEHGMKLYSEALEDTVTSEEAQGLFDMAGDKFQEMTALALFNWGNVHMSKARKKVYKAEESSKEHLCELIKNSYEWALEEYLKAGEKYDAAIKIKSDFHEGFLALGLQQFEQAKLSWYHALSSNVDLLTWPSAEVLHLYNNSEENMEKGMQIWEESQKQNLSKTSNSNYDRLDLQNAGLDGLFKNISSDELAGQEAHMRSQINLLWGTMLYERSIVEFKLGLPTWHETLAVSVEKFELAGASPTDIAVILKNHCSNNTAVDGLAFKIDEIVQAWNEMYKAKKWKSGVPSFRLEPLFRRRVSKTYHAFELA* 722
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g00775 721 Coils Coil 229 256 - -
Lapu3g00775 721 SMART PB1_new 267 344 IPR000270 GO:0005515
Lapu3g00775 721 PANTHER PROTEIN CLMP1 13 719 IPR044517 -
Lapu3g00775 721 SUPERFAMILY TPR-like 37 526 IPR011990 GO:0005515
Lapu3g00775 721 Gene3D Tetratricopeptide repeat domain 34 162 IPR011990 GO:0005515
Lapu3g00775 721 ProSiteProfiles PB1 domain profile. 267 344 IPR000270 GO:0005515
Lapu3g00775 721 SMART tpr_5 36 69 IPR019734 GO:0005515
Lapu3g00775 721 SMART tpr_5 74 109 IPR019734 GO:0005515
Lapu3g00775 721 SMART tpr_5 110 143 IPR019734 GO:0005515
Lapu3g00775 721 Pfam PB1 domain 269 342 IPR000270 GO:0005515
Lapu3g00775 721 ProSiteProfiles TPR repeat profile. 36 69 IPR019734 GO:0005515
Lapu3g00775 721 Gene3D - 267 347 - -
Lapu3g00775 721 MobiDBLite consensus disorder prediction 1 23 - -
Lapu3g00775 721 CDD PB1 269 341 - -
Lapu3g00775 721 SUPERFAMILY CAD & PB1 domains 266 353 - -
Lapu3g00775 721 ProSiteProfiles TPR repeat profile. 110 143 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g00775 Lapu-Chr3 8167230 8172321 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g00775 19 143 Calmodulin-binding Proteins AT3G25230 30.216 1.42e-06 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g00775 K26538 - gmx:100778972 1216.83
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g00775 3 8167230 8172321 Lapu3g00775 3 8167230 8172321 ECH
Lapu3g00775 3 8167230 8172321 Lapu9g00272 9 2653374 2661021 PCT