Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu8g00728 ATGGGTGAAGCTCCAGAAGTGTTCTACATTAATGGATTCTCAAAGTTTGGCCACGAAACCCAACAAGAAAACCATGTCAACGGTCAGAACCATGATTCCTCTTGGTACGAGGAAATCATCGATGAAGATCTCAAATGGTCTTTTAAACTCAACAGTGTGCTCCATAAAGCGATTAGTGAGTACCAGGACATAGCGCTCTTAGACACAAAGCGTTTTGGAAAGGCTTTGGTGCTTGACGGAAAGATGCAGAGTGCTGAAACGGACGAGTTTATTTACCATGAATGCTTGATTCACCCTCCTCTTTTGTGCCACCCTAATCCCAAGACTGTGTTTATAATGGGAGGAGGTGAAGGTTCTGCAGCTAGGGAAGCCCTTAAGCACAGGTCAATGGACAGAGTGGTCATGTGTGATATAGACAAGGAGGTGGTGGATTTCTGCAGAAAATACTTGGTTGCAAACAGGGAAGCATTTTCTAATAAGAAGCTCGACCTTGCCATCAATGATGCCAAGGCTGAATTGGTGAAGAGAAAGGAGAAATTTGATATTATTGTTGGAGATTTGGCAGACCCACTAGAAGATGGACCTTGCTATCAACTCTACACCAAATCCTTCTATGAGAAGACACTGAAACCCAAGCTAACTGACAATGGCATTTTTGTGACCCAGGCCGGACCAGCAGGTATCTTCACACACAAAGAAGTCTTCACTTCTATATATAACACAATCAAACAGGTCTTCAAATATGTGATTGCATACACAACTCATGTTCCATCATTTGCTGACACATGGGGATGGGTCATGGCTTCGGATCAACCACTATCAATTTGTGCTGAAGAAATGGACAGAAGAATCGCAGCAAGAATAGATGGGGAACTTCTCTATCTAAATGGTGCATGGTTCCATTCATCCACAACCATGAATAAAACTGTTTACCAATCTCTGCAGAATGAAACTCACGTGTACACGGAAGAAAATGCTAGATTTATTCCTGGACATGGAATGGCTTTTCGCCTCTAA 1017 0.4267 MGEAPEVFYINGFSKFGHETQQENHVNGQNHDSSWYEEIIDEDLKWSFKLNSVLHKAISEYQDIALLDTKRFGKALVLDGKMQSAETDEFIYHECLIHPPLLCHPNPKTVFIMGGGEGSAAREALKHRSMDRVVMCDIDKEVVDFCRKYLVANREAFSNKKLDLAINDAKAELVKRKEKFDIIVGDLADPLEDGPCYQLYTKSFYEKTLKPKLTDNGIFVTQAGPAGIFTHKEVFTSIYNTIKQVFKYVIAYTTHVPSFADTWGWVMASDQPLSICAEEMDRRIAARIDGELLYLNGAWFHSSTTMNKTVYQSLQNETHVYTEENARFIPGHGMAFRL* 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu8g00728 338 Hamap Polyamine aminopropyltransferase [speE]. 34 315 IPR001045 GO:0003824
Lapu8g00728 338 FunFam Polyamine aminopropyltransferase 86 333 - -
Lapu8g00728 338 Pfam Spermine/spermidine synthase domain 89 267 - -
Lapu8g00728 338 NCBIfam fused MFS/spermidine synthase 106 260 - -
Lapu8g00728 338 Gene3D Spermidine synthase, tetramerisation domain 33 85 IPR037163 -
Lapu8g00728 338 CDD AdoMet_MTases 114 222 - -
Lapu8g00728 338 Pfam Spermidine synthase tetramerisation domain 35 86 IPR035246 -
Lapu8g00728 338 Gene3D Vaccinia Virus protein VP39 86 337 IPR029063 -
Lapu8g00728 338 Coils Coil 159 179 - -
Lapu8g00728 338 ProSiteProfiles Polyamine biosynthesis (PABS) domain profile. 33 270 IPR030374 -
Lapu8g00728 338 PANTHER THERMOSPERMINE SYNTHASE ACAULIS5 29 325 - -
Lapu8g00728 338 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 34 315 IPR029063 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu8g00728 Lapu-Chr8 25257975 25264291 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu8g00728 K18787 - gmx:100815510 663.299
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu8g00728 8 25257975 25264291 Lapu8g00728 8 25257975 25264291 ECH