Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu8g00656 ATGATAAAAATGGGTGACCAAAGACTCATTTTCACACCCCTTTTGGTTCTATTCATGAGTATCCATTCTCATGCTCTTGTCGACCCTTCTAATTGGAAATATGCACCCAACAAAGGAAGTGTTAGAGCTGCGTATTGGCCTTCTGGTGATGACCTTTCACCCTCTTCCATCGACACAAGATACTTCACTCACATTTACTATGCATTCATCCAACAAGACCCTCAATTTTTCCACCTTAGTGTCACCGACTTCGAGAAAAAATGGATTCCACAGTTCATCAACGGGCTCCGCTACCGATACCCGCCTGTCAAAACTCTCTTGTCAATTGGAGGAGGTGGCAGCAACTCAACCGCCTTCTCCCTCATGGCCAGCAACAAACACACCCGACAAGTGTTCATCAACTCCACCATCCACGTGGCACGCCGATACGGTTTCGACGGTCTCGATTTAGACTGGGAATTCCCAGAAAACGAGGTTGACATGTCTAACCTAGGTATGTTATTTCGCGAGTGGCATGAAGCTATAGTGGTGGAAGCGTATACTCATAGAAAACCGCGATTGCTTTTAACAGCCGCAGTTTATTATGCTTCCACCATTAAACTTATTGGTAATGGGCCCAGAACATATCCGACCCAAGCTATTCGTGATTATTTGGATTGGGCCAGCCCAATGTGCTTTGACTACCATGGCGCTTGGGATAATTTCACGGGCTTTAATGCTGCTTTGTATGATCCAAAGTCCAACATAAGTACCCGGTATGGAATTAAATCTTGGATCCAAGAGGGTGTGTCGGCCCAAAAGTTGGTTATGGGTTTACCATTATATGGGCGGACATGGACGCTCCAAGATCCGAATGTTCATGGGGTTGGAGCAAAAGCTATTGGGGCAGCCACTGATACTGATGGTACTTTGGATTATGATGAAATTTTGGTTTTCAACAAAGAAAATGGTGCCACTGTTGTGTATGATGATGTAGCTGTGTCTTTCTACTCTTATGCGGGTACTACTTGGATCGGGTATGATGATGGACCATCCATAACAAAGAAGGTCCAGTTTGCTAGGTCTTTGGGCTTGAAGGGCTATTTCTTTTGGGCTGTTGGAAAGGATAAGGATTGGACCATCTCAAGACAAGGTAAGTAA 1140 0.4491 MIKMGDQRLIFTPLLVLFMSIHSHALVDPSNWKYAPNKGSVRAAYWPSGDDLSPSSIDTRYFTHIYYAFIQQDPQFFHLSVTDFEKKWIPQFINGLRYRYPPVKTLLSIGGGGSNSTAFSLMASNKHTRQVFINSTIHVARRYGFDGLDLDWEFPENEVDMSNLGMLFREWHEAIVVEAYTHRKPRLLLTAAVYYASTIKLIGNGPRTYPTQAIRDYLDWASPMCFDYHGAWDNFTGFNAALYDPKSNISTRYGIKSWIQEGVSAQKLVMGLPLYGRTWTLQDPNVHGVGAKAIGAATDTDGTLDYDEILVFNKENGATVVYDDVAVSFYSYAGTTWIGYDDGPSITKKVQFARSLGLKGYFFWAVGKDKDWTISRQGK* 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu8g00656 379 SUPERFAMILY Chitinase insertion domain 275 340 IPR029070 -
Lapu8g00656 379 SUPERFAMILY (Trans)glycosidases 40 370 IPR017853 -
Lapu8g00656 379 Gene3D - 274 340 IPR029070 -
Lapu8g00656 379 SMART 2g34 40 369 IPR011583 GO:0008061
Lapu8g00656 379 Pfam Glycosyl hydrolases family 18 44 369 IPR001223 GO:0005975
Lapu8g00656 379 ProSiteProfiles Glycosyl hydrolases family 18 (GH18) domain profile. 40 379 IPR001223 GO:0005975
Lapu8g00656 379 Gene3D Glycosidases 55 370 - -
Lapu8g00656 379 ProSitePatterns Glycosyl hydrolases family 18 (GH18) active site signature. 145 153 IPR001579 GO:0004553|GO:0005975
Lapu8g00656 379 FunFam Class V chitinase CHIT5b 274 340 - -
Lapu8g00656 379 PANTHER CHITINASE 43 376 - -
Lapu8g00656 379 CDD GH18_plant_chitinase_class_V 41 375 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu8g00656 Lapu-Chr8 24428254 24429406 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu8g00656 41 376 Glycoside Hydrolase AT4G19810 44.379 1.82e-95 288
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu8g00656 K01183 - gmx:100787511 681.789