Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu8g00636 ATGTCTTCCTTTTCCGCTCTCAGGACTCGATCCTCACCCTTCGTCGCCCAACACTTCTCGATCCATCGGTTCCAGATCCGCTACTCCTCCACCTCCTCCTCCTCCACCGCCTCCTCGCTCCTCAACACCACCGACCCCGTCCGAACCGGCTTCGGTCGAACCGCACTTTCTACTGCCCTTGCCGGCTCCAGTGTCCTAGGGCTTCTTCTGTACGGCTTCTACTCTTCTTCGCTCGCTTCGGATTTTGACTCAATCACTTCTTTCCTTGACCGGTCAACGCCGAATTCCGAGGACCAAAAACGAAGTCGCTCTTTTTTCCCGAAATTCTCACTCCCTGAAAGTTCCGGTGGCTTGCTACTTGGAGATGCGTTTAGGAGAAACGTTTTCTTCAACTATGAGAAGCGCATACGGCTGCGAAGTCCTCCGGAAAAGGTTTTTGAGTACTTTGCAACTGATCGTAGTCCAAAAGGAGAAGCACTGATGAAACCATCCGACCTAATGAGGGCAGTGGTTCCTGTTTTCCCTCCATCTGAATCCCACCTTGTTAGAGATGGATACTTGGGAGGAGAAAGGAGACCGGGTCATTTACGTTGCCCTCCATCTGAATTTTTTATGCTTTTTGATGTAAACAATGACGGGCTTATATCTTTTAAAGAGTATATCTTTTTTGTAACACTACTCAGCATCCCGGAATCTAGTTTTACAGTGGCATTTAAAATGTTTGATGTCAACAATAATGGAGAGATAAACAAGGAAGAGTTCAAGAAAGTGATGGCATTGATGCGATCTCGTAATCGACAGGGTGTTCACCACAGGGATGGACTACGTACTGGCCTAAAGGTGAACGATTCTGTGGAAGATGGAGGGCTGGTGGAATATTTTTTTGATAAAGATGGAAATGGATGCCTCCAACATGATAAATTTGTTAAATTTTTGAGAGACTTGCATGATGAGATTCTGAGACTGGAGTTTGCTCATTATGACTACAAATCTCACCAAACCATATCAGCCAAGGACTTTGCTCTCTCCATGGTTGCTTCTGCAGACATGAGTCATCTAAGCAAGTTGCTTAAACGGGTTGATGTATTGAATGATGATCCATGCCTCAAGGATGCACGTATCACATTTGAGGACTTCAAAAACTTTGCAGAGCTACGAAAAAAGTTAGTGCCATTTTCATTGGCTGTTTTTAGTTTTGGAGAAGTTAATGGTCTGTTGACAAGAGATGATTTTCAAAGAGCAGCATCACAGGTATGCGGCATATCTCTCTCGGACAATGTTGTTGGCATTGTTTTCCATTTGTTTGACACAAATGGAGACGGAAACCTAAGTTTTGATGAGTTTGTGAGAGTGTTACACAAGCGAGAAAGGGACATTGCACAACCCGTGGAGACAGGAATCATGGGTTGGTTATCATGCTGCTGGAATTGTAGCAATAACAAGGTCTCATCTTCAGGGTTGTTTTCCTGA 1470 0.4483 MSSFSALRTRSSPFVAQHFSIHRFQIRYSSTSSSSTASSLLNTTDPVRTGFGRTALSTALAGSSVLGLLLYGFYSSSLASDFDSITSFLDRSTPNSEDQKRSRSFFPKFSLPESSGGLLLGDAFRRNVFFNYEKRIRLRSPPEKVFEYFATDRSPKGEALMKPSDLMRAVVPVFPPSESHLVRDGYLGGERRPGHLRCPPSEFFMLFDVNNDGLISFKEYIFFVTLLSIPESSFTVAFKMFDVNNNGEINKEEFKKVMALMRSRNRQGVHHRDGLRTGLKVNDSVEDGGLVEYFFDKDGNGCLQHDKFVKFLRDLHDEILRLEFAHYDYKSHQTISAKDFALSMVASADMSHLSKLLKRVDVLNDDPCLKDARITFEDFKNFAELRKKLVPFSLAVFSFGEVNGLLTRDDFQRAASQVCGISLSDNVVGIVFHLFDTNGDGNLSFDEFVRVLHKRERDIAQPVETGIMGWLSCCWNCSNNKVSSSGLFS* 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu8g00636 489 ProSitePatterns EF-hand calcium-binding domain. 436 448 IPR018247 -
Lapu8g00636 489 Gene3D - 139 288 - -
Lapu8g00636 489 SUPERFAMILY EF-hand 202 454 IPR011992 -
Lapu8g00636 489 Gene3D - 402 464 - -
Lapu8g00636 489 CDD EFh 202 259 IPR002048 GO:0005509
Lapu8g00636 489 ProSiteProfiles EF-hand calcium-binding domain profile. 423 458 IPR002048 GO:0005509
Lapu8g00636 489 SMART efh_1 427 455 IPR002048 GO:0005509
Lapu8g00636 489 SMART efh_1 199 227 IPR002048 GO:0005509
Lapu8g00636 489 SMART efh_1 233 261 IPR002048 GO:0005509
Lapu8g00636 489 PANTHER EF HAND DOMAIN FAMILY A1,A2-RELATED 39 481 IPR039800 GO:0005509|GO:0006851
Lapu8g00636 489 SUPERFAMILY EF-hand 319 457 IPR011992 -
Lapu8g00636 489 Gene3D - 290 395 - -
Lapu8g00636 489 CDD EFh_MICU 234 455 - -
Lapu8g00636 489 ProSiteProfiles EF-hand calcium-binding domain profile. 229 264 IPR002048 GO:0005509
Lapu8g00636 489 Pfam EF-hand domain pair 404 453 IPR002048 GO:0005509
Lapu8g00636 489 Pfam EF hand 237 260 IPR002048 GO:0005509
Lapu8g00636 489 Pfam EF hand 203 220 IPR002048 GO:0005509
Lapu8g00636 489 ProSitePatterns EF-hand calcium-binding domain. 242 254 IPR018247 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu8g00636 Lapu-Chr8 24107268 24113792 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu8g00636 40 420 EF-hand Containing Proteins AT4G32060 64.962 1.26e-174 497
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu8g00636 K22827 - gmx:100806575 756.133