Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu8g00527 ATGTATGAGCCGAAAAACATCCTTATAACTGGAGCTGCTGGTTTCATAGCCTCACATGTCACTACCAAGCTAATCAACAAGTACCCTAGCTACAAGATTGTAGCTCTTGATAAACTAGACTACTGCTCCACTTTCACGAATTTGAAGTCATGTACTTCATCACCAAACTTCAAATTTATTAAGGGTGATATAGCTACTGCTGACATTGTGAATCATGTTTTGATAGAAGAGAAAATAGACACCATTATGCATTTTGCTGCTCAAACCCATGTGGACAATTCATTTGGAAACTCCATGGAATTCACCTACAATAATATCTATGGCACTCATGTGCTACTTGAAGCTTGCAGGGTTATCAATTGTGTCAAAAGGTTCATTCATGTTAGCACAGATGAAGTCTATGGTGAAACAGACTTAGAGGATGATATTGGAAACCATGAGGCATCTCAGCTTCTACCCACCAATCCTTATTCTGCAACAAAAGCAGGCGCAGAAATGCTGGTGATGGCTTATCACAGCTCTTATGGTCTTCCAGTAATAACTTCCAGAGGCAATAATGTGTATGGTCCAAACCAATACCCAGAAAAGCTTGTTCCTAAGTTCATCCTTCTTGCCATGAAGGGTGAGAAATTGCCAATCCATGGAGACGGATCGAATGTGAGGAGCTACCTCCATTGTGGGGATGTGGCAGAAGCTTTTGATGTCATACTCCACAAAGGAGAGATTGGCCAAATTTACAACATTGGTACCAAGAAAGAAAGGAGTGTGTTAGATGTTGCAGAGGAAATATGCAAACTCTTTAAACTGAATCCTAGAGATGTGATTGAGTTTGTTCAAGATAGGCCTTTCAATGATAAGAGATATTTTCTTTATGATCAAAAGCTTAAACAACTTGGTTGGGAGGAGAGAATTCCCTGGGAGGAAGGACTTAAGAGGACAATTGAGTGGTACCAAAATAATCCTAATTGGTGGGGTGATGTTTCCACTGCTTTAAACCCTCATCCACGTTTCTCAGCCATCAATCTCTCTGATGAAGCTCCATGGTCCTTTCAATATGGATACTCTAGGCTTGCAAGGTCATATACTGAAGATGGAAGAAACAATTCAGGATTCAAGTTTCTGATATATGGGAGGACAGGTTGGATAGGGGGGTTGTTGGGAAAGCTTTGTGATGAAGACAGAATTGATTGGGAATATGGGAGAGGGAGATTGCAAGATAGGAAATCCCTTGAGGAGGATATAAGGAGGGTAAAGCCAACCCATGTTTTGAGTGCAGCTGGTGTTACAGGAAGGCCTAATGTTGATTGGTGTGAATCACACAAGGTTGAAACTATAAGGACTAATGTTGTGGGTACTTTAACACTGGCTGATGTTTGCAAGGAACAAAACTTATATATGATGAATTTTGCAACTGGTTGCATATTTGAGTATGACAAGGAGCATCCTCTAGGATCAGGCATTGGTTTCAAGGAAGAGGACAAGCCAAATTTCATTGGCTCCTTCTATTCAAAGACCAAGGCCATGGTGGAGGACCTTCTAAGAAATTATGAAAATGTCTGCACATTGAGAGTTAGAATGCCAATATCCTCAGATCTTAGCAATCCAAGAAACTTCATCACAAAGATTTCTCGTTACAACAAAGTGGTGAACATACCTAATAGCATGACAGTGCTGGATGAACTCTTGCCCATATCCATTGAAATGGCTAAGAGGAACTTAAGAGGGATATGGAACTTCACCAACCCAGGGGTCATTAGCCACAATCAGATATTAGAATTGTACAGGGATTACATAGATCCACAATTTAAATGGGAGAATTTTGATTTGGAAGAACAAGCAAAGGTAATTGTTGCTCCAAGGAGTAACAATGAAATGGATGCTTCCAAGCTCAAAAATGAGTTCCCACAATTGTTGAGCATCAAAGATTCCATTATCAAGTTTGTCTTTGAGCCTAACAAGAAAACTTGA 1968 0.4014 MYEPKNILITGAAGFIASHVTTKLINKYPSYKIVALDKLDYCSTFTNLKSCTSSPNFKFIKGDIATADIVNHVLIEEKIDTIMHFAAQTHVDNSFGNSMEFTYNNIYGTHVLLEACRVINCVKRFIHVSTDEVYGETDLEDDIGNHEASQLLPTNPYSATKAGAEMLVMAYHSSYGLPVITSRGNNVYGPNQYPEKLVPKFILLAMKGEKLPIHGDGSNVRSYLHCGDVAEAFDVILHKGEIGQIYNIGTKKERSVLDVAEEICKLFKLNPRDVIEFVQDRPFNDKRYFLYDQKLKQLGWEERIPWEEGLKRTIEWYQNNPNWWGDVSTALNPHPRFSAINLSDEAPWSFQYGYSRLARSYTEDGRNNSGFKFLIYGRTGWIGGLLGKLCDEDRIDWEYGRGRLQDRKSLEEDIRRVKPTHVLSAAGVTGRPNVDWCESHKVETIRTNVVGTLTLADVCKEQNLYMMNFATGCIFEYDKEHPLGSGIGFKEEDKPNFIGSFYSKTKAMVEDLLRNYENVCTLRVRMPISSDLSNPRNFITKISRYNKVVNIPNSMTVLDELLPISIEMAKRNLRGIWNFTNPGVISHNQILELYRDYIDPQFKWENFDLEEQAKVIVAPRSNNEMDASKLKNEFPQLLSIKDSIIKFVFEPNKKT* 656
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu8g00527 655 FunFam UDP-glucose 4,6-dehydratase 7 209 - -
Lapu8g00527 655 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 1 328 IPR036291 -
Lapu8g00527 655 CDD dTDP_GD_SDR_e 5 322 IPR005888 GO:0008460|GO:0009225
Lapu8g00527 655 Gene3D - 362 655 - -
Lapu8g00527 655 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 369 644 IPR036291 -
Lapu8g00527 655 Gene3D - 7 311 - -
Lapu8g00527 655 PANTHER DTDP-D-GLUCOSE 4,6-DEHYDRATASE-RELATED 1 336 - -
Lapu8g00527 655 Gene3D - 198 320 - -
Lapu8g00527 655 FunFam Bifunctional dTDP-4-dehydrorhamnose 3,5-epimerase/dTDP-4-dehydrorhamnose reductase 362 655 - -
Lapu8g00527 655 CDD dTDP_HR_like_SDR_e 372 644 - -
Lapu8g00527 655 Pfam NAD dependent epimerase/dehydratase family 401 537 IPR001509 -
Lapu8g00527 655 Pfam GDP-mannose 4,6 dehydratase 8 313 IPR016040 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu8g00527 Lapu-Chr8 22405221 22407678 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu8g00527 6 317 Miscellaneous Gene Families AT1G02000 24.478 4.05e-19 88.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu8g00527 K12450 - gmx:100776241 1268.06
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu8g00527 8 22405221 22407678 Lapu8g00527 8 22405221 22407678 ECH