Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu7g02271 ATGTCCTCTTCTCTCTCCCTATCACTCTCTGCGTCCTCCATCCACGATTCTTCCTTCCTCCATGGAACGAAGCTCTTTCCCCTTTCTCGAAGAGTGGCATCACGCCGCTTCAACTCTTTCTCTGCCAAGTGCTCCCTCGACCACATCCCCAAACAGTTCAGAAAGGAAAATCTCAAAGATGGATTGACGCAAAACTACAAGAATGTACCTCAATATCTATATGGCCTTACTCCTTCACAAATGGACATGTTCATGACAGAAGATAATCCTGTTCGCCGGCAATCTCAGAGTGTTACAGAGGAAAGCATCTCATCTGCGAAGAATTATATGGATAATGGTGGAATGTGGAGTCTATCTGGCATGGGAAAAAATGATGCTTCAAAATACAGCATGAGTGTTAGTATGTATCGAGGAGGTAGGGGAAATGGAAGGCCAAAAACTGCTCCGCCAGATCTGCCTTCTTTGCTTTTGGATGCTCGAATATGCTATCTGGGTATGCCGATTGTTCCAGCTGTGACGGAACTTGTCATTGCTCAATTCATGTGGTTGGATTTTGACAACCCAACGAAACCTATTTACCTGTATATTAATTCATCTGGAACTCAGAATGAGAAGAATGAGACTGTGGGATCTGAAACTGAGGCATATTCCATAGCTGATATGATGTCTTATGTCAAATCAGATGTGTATACTGTGAATTGTGGCATGGCGTTTGGTCAAGCAGCAATGATTCTGTCGCTTGGAACAAAGGGTTGTCGTGCTGTACAGCCAAACTCATCTACGAAATTATATCTCCCAAAAGTCAATAGATCAAGTGGTGCTGTTATAGACATGTGGATTAAGGCAAAAGAGCTTGAGGCAAATACTGAGTATTACATTGAGCTGTTGGCAAAAGGGACAGGGAAATCAAAGGAAGAAATTGCTAAAGATGCCCAGAGGCCTAAGTATCTTCAAGCACAGCAAGCTGTAGACTACGGAATTGCTGACAAAATAATTGATTCAAGTTCATCTGATGCTGCATTTGAGAAGCGGAATTACGATGAAATGCTTGCTCAATCAAGAGCTATGAGGAATCAAGCTGGTGGCAATCCTCAAGCGTCTCCTTCAGGACTCAGGTAA 1119 0.4316 MSSSLSLSLSASSIHDSSFLHGTKLFPLSRRVASRRFNSFSAKCSLDHIPKQFRKENLKDGLTQNYKNVPQYLYGLTPSQMDMFMTEDNPVRRQSQSVTEESISSAKNYMDNGGMWSLSGMGKNDASKYSMSVSMYRGGRGNGRPKTAPPDLPSLLLDARICYLGMPIVPAVTELVIAQFMWLDFDNPTKPIYLYINSSGTQNEKNETVGSETEAYSIADMMSYVKSDVYTVNCGMAFGQAAMILSLGTKGCRAVQPNSSTKLYLPKVNRSSGAVIDMWIKAKELEANTEYYIELLAKGTGKSKEEIAKDAQRPKYLQAQQAVDYGIADKIIDSSSSDAAFEKRNYDEMLAQSRAMRNQAGGNPQASPSGLR* 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu7g02271 372 PANTHER ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT 41 337 IPR023562 -
Lapu7g02271 372 MobiDBLite consensus disorder prediction 351 372 - -
Lapu7g02271 372 PRINTS Clp protease catalytic subunit P signature 151 166 IPR001907 GO:0004176|GO:0004252|GO:0006508
Lapu7g02271 372 PRINTS Clp protease catalytic subunit P signature 310 329 IPR001907 GO:0004176|GO:0004252|GO:0006508
Lapu7g02271 372 PRINTS Clp protease catalytic subunit P signature 231 248 IPR001907 GO:0004176|GO:0004252|GO:0006508
Lapu7g02271 372 PRINTS Clp protease catalytic subunit P signature 191 211 IPR001907 GO:0004176|GO:0004252|GO:0006508
Lapu7g02271 372 Pfam Clp protease 153 334 IPR023562 -
Lapu7g02271 372 Gene3D - 126 340 - -
Lapu7g02271 372 SUPERFAMILY ClpP/crotonase 146 335 IPR029045 -
Lapu7g02271 372 MobiDBLite consensus disorder prediction 356 372 - -
Lapu7g02271 372 CDD S14_ClpP_2 151 331 IPR001907 GO:0004176|GO:0004252|GO:0006508
Lapu7g02271 372 FunFam ATP-dependent Clp protease proteolytic subunit 126 336 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu7g02271 Lapu-Chr7 39068436 39071272 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu7g02271 K01358 - gmx:100820008 658.292
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu7g02271 7 39068436 39071272 Lapu7g02271 7 39068436 39071272 ECH