LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lapu7g02056	ATGGGAAAGCAAAAGCAACAAGTCATTTCCCGCTTCTTCGCTCCCAAAGCTAAATCTCCTTCTTCTTCTCCTCCTCCTTCTCCCCGTCCCAACCTTCCCACTCCCAAAATCTCCGCCACCGCCACATTCTCCCCTTCCAAACGCCGCCTTGCGTCACAATTCACACCCCCTCGCAAGCTCCAGAAGCTTCTCGAACCTTCTCCCTCTTCACTCCACCAACGCTTCCTTCGCAAGTTTCTCGAGCCTTCCTCCCCTCAACACCCTCCTCTCCCTTCCTCTTCCAAACCCCTTACCTACACTCCCCTCGAACAACAGGTCCTCCACCTCAGAGCCAAACACCCCGATGTTCTCCTCATGGTCGAGGTCGGTTACAGGTACCGTTTCTTCGGCCAAGACGCCGAAAACGCCGCCAGAGTCTTAGGCATTTACGCGCACATGGATCACAATTTCTTAACCGCTAGCATACCAACATTTCGACTGAATGTCCACGTGAGGAGGCTCGTCAGTGCTGGGTATAAGGTCGGCGTGGTCCGGCAGACCGAGACCGCCGCCATCAAGGCCCACGGTTCCAACCGCTCGGCGCCGTTCGAGCGCGGGCTGTCAGCGCTTTACACTAAGGCCACGCTCGAGGCGGCGCCGGAGATCGGGGGAGGAGAGGACGGGTGTGGTGGAGAGAGTAATTACTTGATGTGTGTGGTGGAGAAGAGTGTTGTGGGGGAGAAGGGGAATTGTGGAGTGGAGAGTGGTGTTGATGTGAGGGTTGGGGTTGTTGCTGTGGAGATTTCGACCGGGGATGTTGTTTACGGGGAGTTTTGTGATGGTTTTCTGAGGAGTGCGCTTGAGGCTGTTATTGTGAACTTGTCTCCGGCTGAGTTGCTTCTTGGGGACCCTCTTTCAAAGCAAACGGAGAAGTTATTGCTGGATTTTGCTGGGCCTGCCTCAAATGTTCGTGTGGAGCATGTTTCACGGGACGGCTTCACTGATGGCGGTGCTCTTTCTGAAGTTATGACCTTGTATGAGAACATTCATGTAGACAGTCTATCAGATTCAATGGAAAGCAACAATTCGACTGAGCACAGAAGTCAGCAGTTAGTAATCAAGGAGGTGATTAACATGCCAGATTTGTGTGTCCAAGCTTTGGCCTTAACAATTCGTCATTTAAAGGAATTTGGTTTTGAAAGAATTTTTTGTTCAGGAGCTTCTTTAAGGCCCTTCTCAAACAATATGGAAATGACCCTTTCAGCCAATACACTTGAACAACTGGAGGTTTTAAAAAATAACAATGATGGATCTGGGATTGGTTCCTTGCTGCAAATTATGAATCACACTCTTACTATATTTGGTTCCAGACTTCTTAGGCATTGGGTGTCTCACCCATTGTGTGATCGAACTTTAATTTCTTCTCGTCTTCATGCTGTATCTGAAATTGCAGAGTCCATGGGATCTTGTAATGGTACGAACAATCTTGGACATGTTGAAGGAGATCCTGATGTAGCAATCGTGCAACCTCAGTTAGCAAACATACTTTCATTGGTTTTGACAACTCTTGGCCGAGCACCTGACATCCAACGTGGAATTACAAGAATTTTCCATTGCACTGCTTCCCCTTCTGAGTTTGTTGCAGTAATTCAAGCTATTTTCTCTGCTGGAAAACAGCTACAACAACTTAACATCGGAGAGGGGAATAATAACACACTGCGCTCTAATCTGTTAAAAAGGTTAGTTTTGACTGCTTCCTCGGACAGTACAATTGCCAATGCTGCAAAAATGTTGTCATCTTTAAACATAGACTATGCTGATCAAGGAGATCTAACAAAATTAATCACAGCATCAGAGGGACAATTCCCAGAGGTCACTAGAGCTCGTAAGGAGTTCAAGCTGGCAGTGGAACAATTAGATTCGCTTATTGACTTGTATCGCAATTGGCTTAGGATGCAAAATCTGAACTTTCTTAGTATTTCTGGAACAACTCATTTGATTGAGTTATCAACTGATGTAAAGGTTCCTTCAAACTGGGTCAAGGTAAATAGCACAAAGAAAACAATTCGGTATCACCCTCCTGAAGTAGTGACAGGATTGGACAGGTTATCATTAGCAAAAGAGGAGCTCAGTATTGCCTGCCGAGCTGCCTGGAATAGCTTTCTTAGGGACTTCAGTAAACACTATGCTGAGTTCCAAGCTGCTGTTCAAGCACTGGCTGCTTTAGATTGTCTGCATTCACTTGCCATTCTTTCAAGAAATAAGGGTTATGTTCGCCCAGTGTTTCTAGATGATCAAGAGCCAGTTCAGATACAAATTTGTTCTGGTAGACATCCGGTTTTGGAGACCACCTTACAAGACAATTTTGTCCCAAATGATACAAACTTGCATGCAAATGGAGAGTACTGTCAGATTGTTACTGGACCCAATATGGGTGGAAAAAGTTGCTATGTTCGCCAGGTGGCTCTGATTACTATAATGGCTCAGGTTGGTTCCTTTGTCCCAGCATCATCAGCAAAACTGCATGTCCTAGATAGGATCTACACCCGAATGGGTGCTTCTGACAGTATTCAAGAAGGGAGAAGCACCTTCCTAGAAGAATTAAGTGAGACGTCGGATATACTCCAGTGTTGCACAGAACATTCGCTGGTTATCATTGATGAGCTTGGGAGAGGTACAAGTACACATGATGGTATGGCCATTGCTCATGCGACATTGCATTATCTTCTGAAGCAAAAAAGAAGCATGGTCCTCTTTGTCACTCACTATCCAAAGATTGCCAGCCTGGCAACTGAATTTCCTGGCTCTTTGGCAGCATATCACGTGTCACATCTGACCTCACATGATGCAAGTAAAAATTCCACCTTGGATCATGATGTCACTTATCTGTACAAGCTCGTACCCGGTGTTTCAGAGAGGAGTTTTGGATTTAAGGTTGCCCAGCTTGCACAGTTGCCATCGCATTGCATCAGTCGAGCCCTTGTCATGGCTTCCAAATTAGAAGCACTAGTAAATAGTAGAATAGATAGTAGATCGAGAAAGGAGCTATTATTGGATTCGCTGGTGATTGATCAAGAGCAAGAACAGCTTATGGCTCAACCACACGATCGTCCACTTCAAGAGTTTGGCATAGCTTACAAAGATTTCTATCTAAACGTAAAAGCTGCAATACAAGATGATGACTGCGCAAAAAGCTTTCACCTGTTGAAACATGCTAGAAGCATTGCAAAGAAATTAATTGGCAGTTGA	3228	0.4566	MGKQKQQVISRFFAPKAKSPSSSPPPSPRPNLPTPKISATATFSPSKRRLASQFTPPRKLQKLLEPSPSSLHQRFLRKFLEPSSPQHPPLPSSSKPLTYTPLEQQVLHLRAKHPDVLLMVEVGYRYRFFGQDAENAARVLGIYAHMDHNFLTASIPTFRLNVHVRRLVSAGYKVGVVRQTETAAIKAHGSNRSAPFERGLSALYTKATLEAAPEIGGGEDGCGGESNYLMCVVEKSVVGEKGNCGVESGVDVRVGVVAVEISTGDVVYGEFCDGFLRSALEAVIVNLSPAELLLGDPLSKQTEKLLLDFAGPASNVRVEHVSRDGFTDGGALSEVMTLYENIHVDSLSDSMESNNSTEHRSQQLVIKEVINMPDLCVQALALTIRHLKEFGFERIFCSGASLRPFSNNMEMTLSANTLEQLEVLKNNNDGSGIGSLLQIMNHTLTIFGSRLLRHWVSHPLCDRTLISSRLHAVSEIAESMGSCNGTNNLGHVEGDPDVAIVQPQLANILSLVLTTLGRAPDIQRGITRIFHCTASPSEFVAVIQAIFSAGKQLQQLNIGEGNNNTLRSNLLKRLVLTASSDSTIANAAKMLSSLNIDYADQGDLTKLITASEGQFPEVTRARKEFKLAVEQLDSLIDLYRNWLRMQNLNFLSISGTTHLIELSTDVKVPSNWVKVNSTKKTIRYHPPEVVTGLDRLSLAKEELSIACRAAWNSFLRDFSKHYAEFQAAVQALAALDCLHSLAILSRNKGYVRPVFLDDQEPVQIQICSGRHPVLETTLQDNFVPNDTNLHANGEYCQIVTGPNMGGKSCYVRQVALITIMAQVGSFVPASSAKLHVLDRIYTRMGASDSIQEGRSTFLEELSETSDILQCCTEHSLVIIDELGRGTSTHDGMAIAHATLHYLLKQKRSMVLFVTHYPKIASLATEFPGSLAAYHVSHLTSHDASKNSTLDHDVTYLYKLVPGVSERSFGFKVAQLAQLPSHCISRALVMASKLEALVNSRIDSRSRKELLLDSLVIDQEQEQLMAQPHDRPLQEFGIAYKDFYLNVKAAIQDDDCAKSFHLLKHARSIAKKLIGS*	1076

Annotation information

Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Lapu7g02056	1075	MobiDBLite	consensus disorder prediction	34	51	-	-
Lapu7g02056	1075	FunFam	DNA mismatch repair protein Msh3	592	718	-	-
Lapu7g02056	1075	SMART	DNAend	431	777	IPR007696	GO:0005524\|GO:0006298\|GO:0030983
Lapu7g02056	1075	Gene3D	MutS, connector domain	223	410	IPR036678	GO:0005524\|GO:0006298\|GO:0030983
Lapu7g02056	1075	Gene3D	-	750	1027	IPR027417	-
Lapu7g02056	1075	MobiDBLite	consensus disorder prediction	19	33	-	-
Lapu7g02056	1075	Gene3D	DNA repair protein MutS, domain I	92	215	IPR016151	GO:0005524\|GO:0006298\|GO:0030983
Lapu7g02056	1075	Pfam	MutS domain III	416	742	IPR007696	GO:0005524\|GO:0006298\|GO:0030983
Lapu7g02056	1075	Pfam	MutS domain I	100	210	IPR007695	GO:0005524\|GO:0006298\|GO:0030983
Lapu7g02056	1075	MobiDBLite	consensus disorder prediction	1	57	-	-
Lapu7g02056	1075	Pfam	MutS domain II	227	329	IPR007860	GO:0005524\|GO:0006298\|GO:0030983
Lapu7g02056	1075	Gene3D	-	413	742	-	-
Lapu7g02056	1075	ProSitePatterns	DNA mismatch repair proteins mutS family signature.	875	891	IPR000432	GO:0005524\|GO:0006298\|GO:0030983
Lapu7g02056	1075	FunFam	DNA mismatch repair protein	223	408	-	-
Lapu7g02056	1075	SUPERFAMILY	DNA repair protein MutS, domain II	224	425	IPR036678	GO:0005524\|GO:0006298\|GO:0030983
Lapu7g02056	1075	Pfam	MutS domain V	797	994	IPR000432	GO:0005524\|GO:0006298\|GO:0030983
Lapu7g02056	1075	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	750	994	IPR027417	-
Lapu7g02056	1075	FunFam	DNA mismatch repair protein	90	219	-	-
Lapu7g02056	1075	FunFam	DNA mismatch repair protein MSH3	750	1022	-	-
Lapu7g02056	1075	PIRSF	Msh6	90	1052	IPR017261	GO:0006298\|GO:0030983
Lapu7g02056	1075	Gene3D	-	592	718	-	-
Lapu7g02056	1075	SMART	mutATP5	794	991	IPR000432	GO:0005524\|GO:0006298\|GO:0030983
Lapu7g02056	1075	PANTHER	DNA MISMATCH REPAIR PROTEIN MUTS FAMILY MEMBER	104	1010	IPR045076	GO:0005524\|GO:0006298\|GO:0030983\|GO:0140664
Lapu7g02056	1075	SUPERFAMILY	DNA repair protein MutS, domain III	415	747	IPR036187	-
Lapu7g02056	1075	SUPERFAMILY	DNA repair protein MutS, domain I	94	208	IPR016151	GO:0005524\|GO:0006298\|GO:0030983

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lapu7g02056	Lapu-Chr7	36781138	36789874	Dispersed

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lapu7g02056	K08736		-	gmx:100789883	1732.61

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lapu7g02056	7	36781138	36789874	Lapu7g02056	7	36781138	36789874	ECH