Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu7g02050 ATGAATTCAATAATCCTTTTAGGTCCAAAGATGGTCCACAGATTTTCCCATTCTTTGATTATTTTGCGGAGATTGTGTAGCCATCCGTTTGATGGTGATGGATTTGAATGCATTGAGGAGCCGTTGAAAAATCTAGGATTAGATTGTGATTCTACTGTGGATGTAACGCTCCGGTTAGACGAGGATTGGGGTTATAGCCCAAAGCGGTTTTCTCTTAGAAGACGGTTCGTAGAAGGTGTGAAGTTGGATGCTAAGAGGGTCCTTGAGGTTCTCCGGCAAGACGGTCCCGGTGTTGATGCGAGGTTGGTTTTAGGTGAGTTGCATGTAAGGCCATCAGGGCTTCTTGTGAGGGAGGTTCTCTTTGGAATTTTGAAGAACATAAATTCTGAGAATAAAACTAGGTGTGCAAAGCTGGCGTATAAGTTTTTTGTGTGGTGTACTCAGCAAGAGGGTTACCAGCACACTGCGAATGCATATCACTTAGTTATGAACATATATGCGGAGTGTGAGGAGTTTAAGGCATTGTGGAGATTGGTTGACGAAATGATTGAGAAAGGGCTTCCGGCTACTGCTCGAACTTTCAATATCTTGATTCGTACTTGTGGTGAGGCAGGATTGGCAAAGAAATTGGTGGAGAGGTTCATAAAATCAAAGACGTTTAACTTTAGGCCTTTTAAGCACTGTTACAACGCAATCCTACACAGTCTTCTTGTTTTAAACCAGTACAAGTTGATTGAGTGGGTTTATCAGCAGATGTTGCTTGATGGATTTTCTTCAGATATTTTAACTTATAATATTGTCATGTATGCTAAGTACAGACTTGGAAAGTTGGATCAATTCCACAGACTGTTTGATGAGATGGGTAGAAATGGATTTTCTCCAGATTTCCATACCTTCAATATTCTTCTTCATGTTCTTGGCAAAGGGGACAAACCGCTTGCAGCTCTCAATCTCTTAAATCACATGAGAGAAATGGGTATAGAGCCAACTGTGCTTCATTTCACTACATTGATTGATGGACTCAGCAGAGCTGGAAATCTGGATGCTTGCAAGTATTTTTTTGATGAAATGATAAAGAATGGATGTATCCCAGATGTGGTGGCTTACACTGTAATGATAACAGGTTATGTAGTGGCTGGTGACCTTGAGAAAGCCCTGGAAATGTATCAAGATATGATTTCTAGAGAACAAATTCCAAATGTTTTTACATACAATTCCATAATTCGGGGATTATGCAGGGCAGGAAAATTTGATGAAGCATGTTCAATGCTCAAGGAAATGGAAACCAAAGGTTGTAGTCCAAACTCTGTCGTCTATAATTCTTTAGTGAGTAGTTTACGAAATGCTGGAAAGACTGCTGATGCTCATGAAGTGATAAGACAGATGACAGAGAAGAGGAAGTATACCCACATATATTCAAGATACAAAGGTTATAAATGA 1440 0.4 MNSIILLGPKMVHRFSHSLIILRRLCSHPFDGDGFECIEEPLKNLGLDCDSTVDVTLRLDEDWGYSPKRFSLRRRFVEGVKLDAKRVLEVLRQDGPGVDARLVLGELHVRPSGLLVREVLFGILKNINSENKTRCAKLAYKFFVWCTQQEGYQHTANAYHLVMNIYAECEEFKALWRLVDEMIEKGLPATARTFNILIRTCGEAGLAKKLVERFIKSKTFNFRPFKHCYNAILHSLLVLNQYKLIEWVYQQMLLDGFSSDILTYNIVMYAKYRLGKLDQFHRLFDEMGRNGFSPDFHTFNILLHVLGKGDKPLAALNLLNHMREMGIEPTVLHFTTLIDGLSRAGNLDACKYFFDEMIKNGCIPDVVAYTVMITGYVVAGDLEKALEMYQDMISREQIPNVFTYNSIIRGLCRAGKFDEACSMLKEMETKGCSPNSVVYNSLVSSLRNAGKTADAHEVIRQMTEKRKYTHIYSRYKGYK* 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu7g02050 479 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 435 465 IPR002885 -
Lapu7g02050 479 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 260 294 IPR002885 -
Lapu7g02050 479 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 3, MITOCHONDRIAL 291 466 - -
Lapu7g02050 479 Pfam PPR repeat family 260 306 IPR002885 -
Lapu7g02050 479 Pfam PPR repeat family 329 376 IPR002885 -
Lapu7g02050 479 Pfam PPR repeat family 399 446 IPR002885 -
Lapu7g02050 479 NCBIfam pentatricopeptide repeat 402 436 IPR002885 -
Lapu7g02050 479 NCBIfam pentatricopeptide repeat 367 400 IPR002885 -
Lapu7g02050 479 NCBIfam pentatricopeptide repeat 334 366 IPR002885 -
Lapu7g02050 479 NCBIfam pentatricopeptide repeat 437 465 IPR002885 -
Lapu7g02050 479 NCBIfam pentatricopeptide repeat 263 295 IPR002885 -
Lapu7g02050 479 NCBIfam pentatricopeptide repeat 297 331 IPR002885 -
Lapu7g02050 479 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 295 329 IPR002885 -
Lapu7g02050 479 Gene3D Tetratricopeptide repeat domain 243 322 IPR011990 GO:0005515
Lapu7g02050 479 Gene3D Tetratricopeptide repeat domain 323 394 IPR011990 GO:0005515
Lapu7g02050 479 Gene3D Tetratricopeptide repeat domain 395 467 IPR011990 GO:0005515
Lapu7g02050 479 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 330 364 IPR002885 -
Lapu7g02050 479 Gene3D Tetratricopeptide repeat domain 115 239 IPR011990 GO:0005515
Lapu7g02050 479 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 155 189 IPR002885 -
Lapu7g02050 479 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 365 399 IPR002885 -
Lapu7g02050 479 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 400 434 IPR002885 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu7g02050 181 475 Miscellaneous Gene Families AT4G11690 28.716 1.02e-38 145
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu7g02050 - - gmx:100792512 864.374
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu7g02050 7 36717031 36721347 Lapu7g02050 7 36717031 36721347 ECH