Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu7g01715 ATGGGTTCTGCTTCTAGAGTTGGCAGTAGCAGCTACGATTACTCCTTCAAGGTTCTTTTGATTGGTGATTCTGGTGTTGGCAAGAGTAGTCTTCTCCTCAGCTTCATCTCCAATTCTAACTCTATCCATGATCTCTCCCCCACCATTGGTGTGGATTTCAAGATAAAGTTTTTCACAGTTGGTGGTAAAAGGTTGAAGCTCACTATTTGGGACACAGCTGGTCAAGAGAGGTTTGGAACAGTAATAAGTTCTTATTACAGAGGTGCACATGGAATCATTCTTGTCTATGATGTGACACGACGTGAGACATTTACAAATCTCATTGATATATGGGCAAAAGAAGTTGAGCTTTATTCTACTAATCATGATAGCATCAAAATTCTTGTTGGCAATAAGGTGGATAAGGAGAGTGAAAGAGCTGTAAGCAAAGAAGAGGGAATGGCTCTTGCACAGCAACATAGATGTTTGTTCCTAGAGTGTAGTGCTAAAACCAGAGAAAATGTTCAGCAATGCTTTAATGATCTCTCATTAAAGATATTAGATGTGCCAGGTTTAAGGGAAAAGGGGTCTGTTGCAGTGAAAAGGCAAAACCAAAAGCACATATACGAGACATCTCAAAGCGGTGGTTGCTGTTCTTAG 639 0.4038 MGSASRVGSSSYDYSFKVLLIGDSGVGKSSLLLSFISNSNSIHDLSPTIGVDFKIKFFTVGGKRLKLTIWDTAGQERFGTVISSYYRGAHGIILVYDVTRRETFTNLIDIWAKEVELYSTNHDSIKILVGNKVDKESERAVSKEEGMALAQQHRCLFLECSAKTRENVQQCFNDLSLKILDVPGLREKGSVAVKRQNQKHIYETSQSGGCCS* 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu7g01715 212 CDD Rab18 16 179 - -
Lapu7g01715 212 SMART ran_sub_2 21 211 - -
Lapu7g01715 212 SMART rho_sub_3 18 182 IPR001806 GO:0003924|GO:0005525
Lapu7g01715 212 FunFam Ras-related protein RABC1 9 211 - -
Lapu7g01715 212 PANTHER RAS-RELATED PROTEIN RAB 15 188 - -
Lapu7g01715 212 Pfam Ras family 17 179 IPR001806 GO:0003924|GO:0005525
Lapu7g01715 212 ProSiteProfiles small GTPase Rho family profile. 9 180 - -
Lapu7g01715 212 PRINTS Transforming protein P21 ras signature 58 80 - -
Lapu7g01715 212 PRINTS Transforming protein P21 ras signature 122 135 - -
Lapu7g01715 212 PRINTS Transforming protein P21 ras signature 157 179 - -
Lapu7g01715 212 PRINTS Transforming protein P21 ras signature 40 56 - -
Lapu7g01715 212 PRINTS Transforming protein P21 ras signature 16 37 - -
Lapu7g01715 212 ProSiteProfiles small GTPase Rab1 family profile. 11 212 - -
Lapu7g01715 212 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 11 187 IPR027417 -
Lapu7g01715 212 ProSiteProfiles small GTPase Ras family profile. 3 212 IPR001806 GO:0003924|GO:0005525
Lapu7g01715 212 NCBIfam small GTP-binding protein domain 14 173 IPR005225 GO:0005525
Lapu7g01715 212 SMART rab_sub_5 16 182 - -
Lapu7g01715 212 Gene3D - 7 208 IPR027417 -
Lapu7g01715 212 SMART ras_sub_4 13 182 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu7g01715 Lapu-Chr7 32685040 32689743 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu7g01715 15 172 EF-hand Containing Proteins AT5G27540 29.697 3.27e-12 63.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu7g01715 K07910 - gmx:100500172 394.815
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu6g00550 6 5765743 5769592 Lapu7g01715 7 32685040 32689743 ECH
Lapu7g01715 7 32685040 32689743 Lapu7g01715 7 32685040 32689743 ECH