Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu7g00635 ATGCGGCCCAGAGTAGTAGCGTACTCCTTCCCTGAGGAGGTGCTGGAGCACGTGTTCTCCTTCATCGAGTGCGACAAGGACCGTGGCTCGATTTCCCTCGTCTGCAAGTCCTGGTACGAGATCGACCGCTGGTGCCGCCGTAAGGTCTTTGTCGGAAACTGCTATGCCGTCTCTCCGGCCACCGTGGTCAACCGCTTCCCCAAAGTTAGATCCATAACCATCAAGGGCAAGCCGCACTTCGCGGACTTCAATTTGGTCCCCGAGGGTTGGGGCGCTTACGTCGGCCCTTGGATCAAGGCCATGGCCACTGCCTACCCCTGGCTCCAGGAGATCAGGCTCAAGAGGATGGTAGTCACCGACGAATGCTTGGAGCTTATCGCTAAATCGTTCAAGAACTTCGGAGTGCTGGTGCTCACCTCTTGCGAGGGTTTCACCACTGATGGACTTGCTGCCATTGCCGCCCATTGCAGGAATTTGAGGGAGTTGGAGTTACGGGAGAGTGAAGTGGAAGACATTTGTGGGCACTGGCTTAGCCATTTTCCGGATTCATACACATCATTGGTTTCCCTTAACATTTCTTGCTTAGGCAATGAGGTGAATTTGTCTGCCCTAGAGCGTCTGGTTAGTAGGTGTCCCAATCTGCAAACTCTCCGCCTCAACCGTGCTGTACCCCTAGACAGGCTGGCCAACGTTCTTCGTGGAGCTCCTCAGTTGGTTGAGCTAGGCACGGGAGCCTACACGACTGAGATGCGGCCGGAGGTCTATTCGAACCTGGCCGAAGCATTTTCTGGGTGCAGGCAATTGAAAAGCTTGTCTGGATTTTGGGACGTGCTCCCCTCCTACCTTCCAGCTGTTTATCCTATCTGCTCCAACCTGACATCACTAAACATGAGTTATGCAACTATTCAAAGCCCTGATCTTATAAAGCTTGTTAGTCAGTGTGAGAATTTACAGCGGTTATGGGTGCTGGATTACATAGAAGATGCTGGCCTTGAAGTGATTGCTGCGTCCTGCAAGGATCTGAGGGAGTTGAGGGTGTTTCCATCGGACCCATTTGGGTTAGAACCAAATGTAGCATTGACAGAGCAGGGCCTTGTTTCTGTATCTGAAGGCTGCTCGAAGCTCCAGTCAGTTCTATATTTTTGTCGGCAAATGTCTAATGCTGCCTTGCTTACAATTGCCAGGAACAGGCCTAATATGACTCGTTTTAGACTGTGTATTATTGAGCCTCAAGTTCCAGATTATCTTACCCATGATCCTCTGGATGCTGGTTTTGGAGCTATTGTAGAGCATTGCAAGGATCTTCGGCGCCTTTCCCTTTCTGGGCTTCTTACTGACCGTGTTTTTGAGTATATTGGGACTTACGGTAAGAAGCTTGAGATGCTTTCTGTGGCTTTTGCTGGAGATAGCGATTTGGGACTCCATCATGTGCTGTCTGGGTGTGACAACCTTAGGAAGCTGGAGATCAGGGACTGCCCCTTTGGTGACAAGGCCCTTTTAGCCAATGCTGCAAAGCTGGAGACAATGCGATCCCTTTGGATGTCCTCTTGCTTGGTGAGTTATGGAGCATGTAAACTGCTGGGTCAGAAAATGCCGATGCTTAATGTTGAAGTCATTGATGAAAGAGGACCTCCAGATTCAAGGCCGGATAGTAGTCCTGTTGAGAAACTATACATTTACAGGACTGTTTCTGGGCCAAGATTGGACATGCCAGGACAATTTGATGTGAGAGTTGTTGATGCAGGTACATGCCTACAATGCTACTGA 1767 0.5008 MRPRVVAYSFPEEVLEHVFSFIECDKDRGSISLVCKSWYEIDRWCRRKVFVGNCYAVSPATVVNRFPKVRSITIKGKPHFADFNLVPEGWGAYVGPWIKAMATAYPWLQEIRLKRMVVTDECLELIAKSFKNFGVLVLTSCEGFTTDGLAAIAAHCRNLRELELRESEVEDICGHWLSHFPDSYTSLVSLNISCLGNEVNLSALERLVSRCPNLQTLRLNRAVPLDRLANVLRGAPQLVELGTGAYTTEMRPEVYSNLAEAFSGCRQLKSLSGFWDVLPSYLPAVYPICSNLTSLNMSYATIQSPDLIKLVSQCENLQRLWVLDYIEDAGLEVIAASCKDLRELRVFPSDPFGLEPNVALTEQGLVSVSEGCSKLQSVLYFCRQMSNAALLTIARNRPNMTRFRLCIIEPQVPDYLTHDPLDAGFGAIVEHCKDLRRLSLSGLLTDRVFEYIGTYGKKLEMLSVAFAGDSDLGLHHVLSGCDNLRKLEIRDCPFGDKALLANAAKLETMRSLWMSSCLVSYGACKLLGQKMPMLNVEVIDERGPPDSRPDSSPVEKLYIYRTVSGPRLDMPGQFDVRVVDAGTCLQCY* 589
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu7g00635 588 PANTHER F-BOX/TPR REPEAT PROTEIN POF3 89 537 - -
Lapu7g00635 588 CDD F-box_AtTIR1-like 9 46 - -
Lapu7g00635 588 Pfam F-box 8 48 IPR041567 -
Lapu7g00635 588 Pfam Transport inhibitor response 1 protein domain 67 113 IPR041101 -
Lapu7g00635 588 FunFam Transport inhibitor response 1 47 576 - -
Lapu7g00635 588 SUPERFAMILY F-box domain 9 46 IPR036047 GO:0005515
Lapu7g00635 588 Gene3D Ribonuclease Inhibitor 47 576 IPR032675 -
Lapu7g00635 588 FunFam Transport inhibitor response 1 6 46 - -
Lapu7g00635 588 Gene3D - 5 46 - -
Lapu7g00635 588 SMART fbox_2 10 51 IPR001810 GO:0005515
Lapu7g00635 588 SUPERFAMILY RNI-like 68 535 - -
Lapu7g00635 588 SMART LRR_CC_2 432 455 IPR006553 -
Lapu7g00635 588 SMART LRR_CC_2 372 396 IPR006553 -
Lapu7g00635 588 SMART LRR_CC_2 481 505 IPR006553 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu7g00635 Lapu-Chr7 7325163 7329382 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu7g00635 K14485 - gmx:100809794 1088.17
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu7g00635 7 7325163 7329382 Lapu7g00635 7 7325163 7329382 ECH
Lapu6g00768 6 8029104 8033677 Lapu7g00635 7 7325163 7329382 PCT