Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu7g00547 ATGAATCACACCCGTCTGATTTCCGGTGGAGGATGGATACTCCGGCGACTGTGCACGGCGGCTGAGAGTCCAGCCAAAAGTCCAAACCTCTATCAAATATTATCGGCGTTGGACATGACAGGAGGAAGCGTGTCGGAAACTTTGGACAACCATGTAATGCAAGGCAAAGCCATAAAAAAAGCAGAGATCGAAAGATGCGTGGATCAGTTCCGAAGGTATGGCAGATTTCAGCTTGCAATCGAGATAATAGAATGGATGGAGATGGGGAAAGTTAACTTTTCCTGGAGTAATTATACAGTGCGATTAGATCTTGTGTCCAAGACCAAAGGGGTGGCTGCGGCTGAGAATTTTTTCAATGGTCTTCCTCCTCCAGCCAAGAACAAGTTTACGTATGGTGCTCTCTTGAACTGTTACTGCAAGGAACTGATGAAAGACAAGGCATTGAGTCATTTTGACAAAATGGATGAATTGGGTTATGTTACTTCTCTGGCTTTCACCAATTTGATGAGTCTGTTTATGAGAATTGGTGAACCCCAGGAAGTGCCTCGACTGGTGGGGCTAATGAAGAGTAGAAGCCTTCCCTTGAGTTCATTTGCGTATCATATCTGGATGAACAGCTGCGCCTCTTCTAGCGATCTTGATGGGGTGGAGAGAGTCTATGAGGAGATGAAAACTGCAAGTGAGGATCAAATTGGTTGGCAGACTTACAGCAACCTTGCTGCTATTTATGTAAAGGTTAAGGACTTTGAGAAGGCCGAAATGATGCTTAAGATGCTGGAGAAACAAGCGAAGCCACGGCAGCGTGAAGCTTACCATAGCTTGCTTGGCCTCTATGCTGGGACTGGTAATTTAGGAGAGGTTCATAGAGTGTGGAATTCCCTCAAGTCTGTCTCCCCTGTGATCAATTTGAGTTATCTTTTTATGCTTAGTTCCCTCCGAAGGCTTAATGATATAGAGGGCTTAACAAAATGCTTTAAGGAGTGGGAAGCTAGTTGTATTAGGTATGATTGGAGGTTAGTTAGTGTCTGTGTTAGTGCTTATTTGGGTCAAAACATGGTGGAAGAAGCTGCATTGGTGTTTGAGGGGGCTAGAAAGAGGAGCAAAAAGCCTTTGTTTAGGATTGAGGAAGTGTTCATGTTGTATTTCTTGGAGAAACGTCAGTTGGATGCTGCTGTGAGGCACTTGGAGGCGGCGTCTTCAGAAGTGAAGGGTGATGAATGGCGTCCTTCACCACGAGTTGTTGGGGCTTTTCTGAAGTACTACGAAAAAGAGACGGGTGTAGATGGTGTGGATGAGTTGTGTAAGATTCTCAAGGCTAACAATTTTGATGATTCCTGGATTAAAACTTGCATTAATGCGTCCAAATCGTCTCCTGAAATTGATCCAGGATTGAAGGAAGATGATCCTCAAAACTACCGTGCGCAGGAAAACTAG 1434 0.4463 MNHTRLISGGGWILRRLCTAAESPAKSPNLYQILSALDMTGGSVSETLDNHVMQGKAIKKAEIERCVDQFRRYGRFQLAIEIIEWMEMGKVNFSWSNYTVRLDLVSKTKGVAAAENFFNGLPPPAKNKFTYGALLNCYCKELMKDKALSHFDKMDELGYVTSLAFTNLMSLFMRIGEPQEVPRLVGLMKSRSLPLSSFAYHIWMNSCASSSDLDGVERVYEEMKTASEDQIGWQTYSNLAAIYVKVKDFEKAEMMLKMLEKQAKPRQREAYHSLLGLYAGTGNLGEVHRVWNSLKSVSPVINLSYLFMLSSLRRLNDIEGLTKCFKEWEASCIRYDWRLVSVCVSAYLGQNMVEEAALVFEGARKRSKKPLFRIEEVFMLYFLEKRQLDAAVRHLEAASSEVKGDEWRPSPRVVGAFLKYYEKETGVDGVDELCKILKANNFDDSWIKTCINASKSSPEIDPGLKEDDPQNYRAQEN* 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu7g00547 477 Gene3D Tetratricopeptide repeat domain 232 461 IPR011990 GO:0005515
Lapu7g00547 477 SUPERFAMILY TPR-like 196 296 IPR011990 GO:0005515
Lapu7g00547 477 Pfam PPR repeat 129 158 IPR002885 -
Lapu7g00547 477 Pfam PPR repeat 199 225 IPR002885 -
Lapu7g00547 477 Pfam PPR repeat 235 261 IPR002885 -
Lapu7g00547 477 NCBIfam pentatricopeptide repeat 129 160 IPR002885 -
Lapu7g00547 477 NCBIfam pentatricopeptide repeat 199 225 IPR002885 -
Lapu7g00547 477 MobiDBLite consensus disorder prediction 460 477 - -
Lapu7g00547 477 MobiDBLite consensus disorder prediction 456 477 - -
Lapu7g00547 477 PANTHER OS12G0527900 PROTEIN 26 454 - -
Lapu7g00547 477 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 127 161 IPR002885 -
Lapu7g00547 477 FunFam Pentatricopeptide repeat-containing protein mitochondrial 60 269 - -
Lapu7g00547 477 Gene3D Tetratricopeptide repeat domain 59 231 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu7g00547 Lapu-Chr7 6213252 6215214 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu7g00547 30 461 EF-hand Containing Proteins AT1G02150 31.746 1.82e-68 226
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu7g00547 - - gmx:100781679 783.097
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu7g00547 7 6213252 6215214 Lapu7g00547 7 6213252 6215214 ECH
Lapu7g00547 7 6213252 6215214 Lapu6g00673 6 7015319 7016892 PCT