Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g02561 ATGAGTTTCGTGCCAAAGGAGACAATCGAAGTCATCGCACAGAGCATCGGCATCACCAATTTGTCCCCCGATGTTGCCCTCGCTCTCGCCCCCGATCTCGAGTATCGCATTCGCGAAATCATGCAGGAATCGATAAAATGCATGCGCCATTCCATGAGAACTTTTCTTAGTACAGAGGATGTGGATACTGCACTTGCATTGAGAAATTTGGAGCCGATATATGGGTTCACCTCTAATGATCCTCCGAGGTTCAAAAGAGCTGCTGGACATAAGGATTTGTTCTACATCGATGACAAAGATGTGGATATCAAAGATCTTATTGAAGCTCCCTTACCAAAAGCACCCCTTGATACATCAATTACCAGTCACTGGTTGGCTATTGAAGGTGTTCAACCTGCAATTCCTGAAAATGCTCCAGTTGAAGCCCCCTCTGAAATAAGAAAATCTGAATATAAGGAAGACGGGCTTTCTGTCGATGTTAAATTACCTGTTAAACATTTGATAACAAGGGAGCTTCAGCTCTACTACGAGAAAATAACTGACCTAACATTAAATAAGTCTGGATCCATTCCGTTCAGAAGAGCATTGATTAGCTTGGCAACAGACTCAGGACTCCATCCCTTAGTTCCATATTTCACATGCTTTGTTGCGGATAAGGTGGCACGTAATTTACATAATTTAGCTGTTTTGTTTGCCTTGATGCGCCTTGTGCGGAGCCTTGTGCAAAATTCTCAAATACACATAGAACTTTATTTACATCAATTGATGCCGCCTATCATTACTTGCATTGTTGCAAAAAGGATAGGAAACAGACTATCTGATGATCACTGGGAGCTTAGGAACTTCAGTGCTAATCTTGTTGCTTCAATATGCCAAAGATTTGGGCATATATATCACAATCTGCAGCCACGTGTGACAAAGACATTTCTTCATTCTTTCTTGGACCCTACAAAAGCTCTGCCTCAGCACTATGGTGCAATTAAAGGGATAGAAGCTCTTGGATCAAGACTGATTCACTTGCTTATACTTCCAAATCTCGAGCCATATTTGCATCTTCTTGAGCCAGAAATGCAACCCGAGAAACAAAAAAATGAAATGAAGAGGCTTGAAGCTTGGCAGGTTTATGGAGCTTTGTTGGGTGCAGTAGGCCAATGCGTGCATGAAAAGGTCAAAATGTTCAGCAATTTGTTCTCTCCTCCAACTCGGGTTACTTCAAGAGGCAGTGGAAAAGCCATTATTCGGATGTCGGGCAAACGAAAAGCCAGTGCCGACAATCTGATGCAGCAGCAACCTCCCATGAAGAAACTTTCAACAGATGGCCATGGAGGTGTAATACCAATGAATTCCATGTCAGTTGACATGCAAGGCTCAACAGGGGGATTTTCCACCATGATGGGGGCTCCTACGATGTCGATGACTCGTCAAATTTCGAGTGACAATGTGCCGGGGAGGGAGGTTGGAGATCAACAGAGGAAGGTGTCTGCCACTCTTGCTCAGGCTTGGAAGGATGACATTGATGCAGGAAATTTGGTGTCATCAGTGGTTGAATTGTTTGGCGAAAGGGTGTTACCATTTGTTCCAAACCCTGAAGCATTTATGTTTTTGTAG 1608 0.4347 MSFVPKETIEVIAQSIGITNLSPDVALALAPDLEYRIREIMQESIKCMRHSMRTFLSTEDVDTALALRNLEPIYGFTSNDPPRFKRAAGHKDLFYIDDKDVDIKDLIEAPLPKAPLDTSITSHWLAIEGVQPAIPENAPVEAPSEIRKSEYKEDGLSVDVKLPVKHLITRELQLYYEKITDLTLNKSGSIPFRRALISLATDSGLHPLVPYFTCFVADKVARNLHNLAVLFALMRLVRSLVQNSQIHIELYLHQLMPPIITCIVAKRIGNRLSDDHWELRNFSANLVASICQRFGHIYHNLQPRVTKTFLHSFLDPTKALPQHYGAIKGIEALGSRLIHLLILPNLEPYLHLLEPEMQPEKQKNEMKRLEAWQVYGALLGAVGQCVHEKVKMFSNLFSPPTRVTSRGSGKAIIRMSGKRKASADNLMQQQPPMKKLSTDGHGGVIPMNSMSVDMQGSTGGFSTMMGAPTMSMTRQISSDNVPGREVGDQQRKVSATLAQAWKDDIDAGNLVSSVVELFGERVLPFVPNPEAFMFL* 536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g02561 535 Pfam TAF6 C-terminal HEAT repeat domain 259 346 IPR011442 GO:0006367
Lapu6g02561 535 CDD TAF6C 165 381 IPR011442 GO:0006367
Lapu6g02561 535 SMART TAF_cls 2 68 IPR004823 -
Lapu6g02561 535 FunFam transcription initiation factor TFIID subunit 6 164 369 - -
Lapu6g02561 535 FunFam transcription initiation factor TFIID subunit 6 1 66 - -
Lapu6g02561 535 SUPERFAMILY ARM repeat 223 385 IPR016024 -
Lapu6g02561 535 Pfam TATA box binding protein associated factor (TAF) 1 65 IPR004823 -
Lapu6g02561 535 Gene3D Histone, subunit A 1 66 IPR009072 GO:0046982
Lapu6g02561 535 Gene3D - 164 369 IPR046344 GO:0006367
Lapu6g02561 535 SUPERFAMILY Histone-fold 1 65 IPR009072 GO:0046982
Lapu6g02561 535 PANTHER TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 6 2 531 IPR037796 GO:0000124|GO:0005669|GO:0006367|GO:0016251|GO:0046695
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g02561 Lapu-Chr6 25580329 25590793 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g02561 K03131 - gmx:100799998 975.311
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu6g02561 6 25580329 25590793 Lapu6g02561 6 25580329 25590793 ECH