Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g02555 ATGGTGACAGAGGAACAAATATCGGAAGCGGTATCGTCGCTGCTGCGCGAATCGAACCCTAGCCAGCGTAGCTTCACGACGCTGAACCAGGTGGTGGAGGAGCTTCAGGCCAAGCTCGGCCACGACCTCTCTCACAAGCTCGATTTCATCACCGCGCAGATCAACCTCCTCTTCGGATCCCAACCACAGCCACCACAACCTCCGCCGCAAAACGCGCAGAGGCAGTTGCAACAGCCGAGAGATCGTTTTGCCCCTTCACCAAACCCTAATTTCCACTCTGTCCCTGTCAGTTCCGGCTTCCAGGCTCCCAAATTACCTTCTTCTAACGCTGTCGTCGCCACTGCTGCTGATATTTCGCGCGTTGAAGCTCCTTCTGCTCCTGCTCCTGCTCCAGCTCCTGCTCCTGTTAACGAGGTTCCGAAGGAAAGTACTCAAACGAAGGTAAAGAGAAGAGGTGGCCCAGGAGGTCTCACCAAACTTTGTGGTGTATCACCTGAACTTCAGGTCATTGTTGGCCAGCCAGCACTGTCGAGGACTGAGATTGTCAAGCAACTGTGGGCTTACATAAGGAAAAACAATCTTCAAGATCCCAGCAACAAAAGGAAAATAATTTGCAATGATGAGCTGCGTGTGGTGTTTGAGACAGATTGTACGGATATGTTCAAGATGAACAAGCTGCTAGCTAAACACATTATCCCCCTGGAACCAACCAAAAAGCCTGTTCCAAAGAAGCAGAAGGTAGATGTGGACTCAGGAAAAAGAATTGCTGAACCCACTCCCTCTGTAATAATATCTGATGCACTCGCTAACTTTTTTGGAATTACTGGAAGGGAGATGCTGCAGTCTGAGGTTCTGAGACGTATCTGGGAGTACATAAAAGTCAACCAGCTAGAGGATCCCATGAATCCTATGGCAATACTGTGTGATGCGAAGCTTCAGGAGATCTTTGGCTGTGAAAGCATTTCGGCATTGGGGATACCTGAAGTTCTGGGCCGTCATCATATTTTTAGGAGTTCATGA 1020 0.4941 MVTEEQISEAVSSLLRESNPSQRSFTTLNQVVEELQAKLGHDLSHKLDFITAQINLLFGSQPQPPQPPPQNAQRQLQQPRDRFAPSPNPNFHSVPVSSGFQAPKLPSSNAVVATAADISRVEAPSAPAPAPAPAPVNEVPKESTQTKVKRRGGPGGLTKLCGVSPELQVIVGQPALSRTEIVKQLWAYIRKNNLQDPSNKRKIICNDELRVVFETDCTDMFKMNKLLAKHIIPLEPTKKPVPKKQKVDVDSGKRIAEPTPSVIISDALANFFGITGREMLQSEVLRRIWEYIKVNQLEDPMNPMAILCDAKLQEIFGCESISALGIPEVLGRHHIFRSS* 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g02555 339 CDD SWIB-MDM2_like 161 231 - -
Lapu6g02555 339 Gene3D - 1 58 - -
Lapu6g02555 339 SUPERFAMILY SWIB/MDM2 domain 257 334 IPR036885 -
Lapu6g02555 339 CDD SWIB-MDM2_like 262 333 - -
Lapu6g02555 339 SMART swib_2 258 339 IPR019835 -
Lapu6g02555 339 SMART swib_2 157 236 IPR019835 -
Lapu6g02555 339 ProSiteProfiles DEK C-terminal (DEK-C) domain profile. 1 59 IPR014876 -
Lapu6g02555 339 SUPERFAMILY SWIB/MDM2 domain 150 236 IPR036885 -
Lapu6g02555 339 Pfam SWIB/MDM2 domain 161 231 IPR003121 -
Lapu6g02555 339 Pfam SWIB/MDM2 domain 263 333 IPR003121 -
Lapu6g02555 339 Pfam DEK C terminal domain 2 58 IPR014876 -
Lapu6g02555 339 MobiDBLite consensus disorder prediction 122 157 - -
Lapu6g02555 339 Gene3D SWIB/MDM2 domain 152 240 IPR036885 -
Lapu6g02555 339 Gene3D SWIB/MDM2 domain 256 339 IPR036885 -
Lapu6g02555 339 PANTHER SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY D 243 333 - -
Lapu6g02555 339 MobiDBLite consensus disorder prediction 58 103 - -
Lapu6g02555 339 MobiDBLite consensus disorder prediction 73 103 - -
Lapu6g02555 339 ProSiteProfiles SWIB/MDM2 domain profile. 257 336 IPR003121 -
Lapu6g02555 339 ProSiteProfiles SWIB/MDM2 domain profile. 156 233 IPR003121 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g02555 Lapu-Chr6 25513694 25518273 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI/SNF-BAF60b Lapu6g02555 SWIB 1.3e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g02555 - - gmx:100801960 533.872
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu6g02555 6 25513694 25518273 Lapu6g02555 6 25513694 25518273 ECH