Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g02524 ATGGATATTCCAGAGTACACAGGTATTGTTTTAGGTAAACTTCAGAGATTTGAGCCTGAGAATGCTTCAAAGATCTTAGGGTATCTCCTTGTCCAAGAACATGGTGAGCAAGATATGGCGAAATTGGCTTCATTTCCTGACCATTTAATTCGTGACGTGGCGTTCCAGACCAGAACCAAACTTCAAAGGTCAGCTGCTAGATCAACCATTCATCCAATTTCACTTCCCATGAACTGTCAACCAGGTTTTGGCCATTTGTCAGTAATCTCCCCTACTACAGCAGCAAGTTTCCAGGTTCAATCTCCCTACTGGGATCCTCAGTCTGCTAGCAATACCAATGCAGAATATATGACAGTAGGTTACTTGGATTCTATCTCTGAACTTCAAAAGCAAACCCCATTCTTCAGTCTAGAGAATCATATGGATGCTATGAATTCTAGGGCAGTTGGGGCTTCTGGCACTCCTGGGATTGCTAATGATTACTATGGCTTAGATGCTTCATCAGCTGGTAATTTGGGTGGGAAAGCTGGTAGAAGGTTTGACTTTCCAGTCAAGACCTGTCACTATTTTAACAAAGGATTTTGTAAGCATGGAAATAGCTGTAGATATTATCATGCACTAGGTGTTCCTGATGTGTTCTCTCACATGTATGGAAATGATAATTTTAATGATGATCAGATGATTTCACCTGGGTCACTGGCACAACTAGAGTCAGAAATTGTTGAACTCCTGAAACTGAAAAAGGGTGGCTCCATATCAATTGCTTCCCTTCCAATGGCTTACTTTGACAAGTATAAGAAGGTGCTGCAGGCTGATGGCTACCTCACTGAGAGCCAGAGACATGGTAAGTCTGGCTACAGTTTGACAAAGCTTCTTGCACGGTTGAAGAATAGCATTCGGCTAATTGACAGGCCTCATGGGCAGCATTCGGTTGTTCTGGCGGAAGATGCTCCAAAGTTCCATGGAAAGGGAGATTATGGTAAGTACATCTGTGCATCACGACAAATATACCTGACATTTCCGGCTGACAGCACTTTTAGCGAGGGTGATGTTTCAAACTACTTTAGCACGTTTGGGAAAGTTGAAGATGTGAGGATTCCAAGCCAAGAAAGAAGGATGTTTGGATTTGTGACATTTGAAGATCCTGAAACTGTTAAATCAATTTTGGATAAGGGAAATCCCCATTATGTCTGTGAATCACGGGTTCTTGTGAAACCTTACAAGGAGAAGCCAAAACTTATGCTCAGAAAGCACTCAGATAGAATTGAGCACCCGCACCCTGCTTATTACTCAGCACACTACGTAGATGTTGACACTGAACCTACCTCAATTCCAAGAGGTTACAGGAACCCTCGATTTCTTAGGAGGCTGATCATTGAACAGCAAGAGGAGGCTTCCCTAGAATTTCAGAGAAGACGTTTTGCAGAGCTGCAATTGGCCCAAAAATCTTTTGCCACTTCACCCCATGTAGGCTTTAACACGGACAGATCAAAAGTTTCAGATGATCATTTCAATGTCCAGTCTGCCGAATCTCGCAATCACGTTCTGAATGACGAAGCCACGGATAACAATTACACTGATGAGGACAGCAATCAAGGACTGAATCTCCCAGACAGCCCATCTTCATTTCCAGTAGATAGTGGAATTTCAGCAGTAATGTAG 1662 0.429 MDIPEYTGIVLGKLQRFEPENASKILGYLLVQEHGEQDMAKLASFPDHLIRDVAFQTRTKLQRSAARSTIHPISLPMNCQPGFGHLSVISPTTAASFQVQSPYWDPQSASNTNAEYMTVGYLDSISELQKQTPFFSLENHMDAMNSRAVGASGTPGIANDYYGLDASSAGNLGGKAGRRFDFPVKTCHYFNKGFCKHGNSCRYYHALGVPDVFSHMYGNDNFNDDQMISPGSLAQLESEIVELLKLKKGGSISIASLPMAYFDKYKKVLQADGYLTESQRHGKSGYSLTKLLARLKNSIRLIDRPHGQHSVVLAEDAPKFHGKGDYGKYICASRQIYLTFPADSTFSEGDVSNYFSTFGKVEDVRIPSQERRMFGFVTFEDPETVKSILDKGNPHYVCESRVLVKPYKEKPKLMLRKHSDRIEHPHPAYYSAHYVDVDTEPTSIPRGYRNPRFLRRLIIEQQEEASLEFQRRRFAELQLAQKSFATSPHVGFNTDRSKVSDDHFNVQSAESRNHVLNDEATDNNYTDEDSNQGLNLPDSPSSFPVDSGISAVM* 554
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g02524 553 FunFam zinc finger CCCH domain-containing protein 53-like isoform X2 341 412 - -
Lapu6g02524 553 MobiDBLite consensus disorder prediction 507 553 - -
Lapu6g02524 553 Gene3D - 339 412 IPR012677 -
Lapu6g02524 553 CDD RRM_AtC3H46_like 336 405 IPR034365 -
Lapu6g02524 553 SMART rrm1_1 335 405 IPR000504 GO:0003723
Lapu6g02524 553 MobiDBLite consensus disorder prediction 509 546 - -
Lapu6g02524 553 SUPERFAMILY CCCH zinc finger 182 206 IPR036855 GO:0046872
Lapu6g02524 553 ProSiteProfiles OST-type HTH domain profile. 232 315 IPR025605 -
Lapu6g02524 553 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 334 410 IPR000504 GO:0003723
Lapu6g02524 553 ProSiteProfiles Zinc finger C3H1-type profile. 181 208 IPR000571 GO:0046872
Lapu6g02524 553 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 346 393 IPR000504 GO:0003723
Lapu6g02524 553 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) 1 544 - -
Lapu6g02524 553 Pfam OST-HTH/LOTUS domain 232 311 IPR025605 -
Lapu6g02524 553 SUPERFAMILY RNA-binding domain, RBD 345 429 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g02524 Lapu-Chr6 25204588 25208693 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g02524 - - var:108341215 956.822
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu6g02524 6 25204588 25208693 Lapu6g02524 6 25204588 25208693 ECH
Lapu6g02524 6 25204588 25208693 Lapu6g02524 6 25204588 25208693 PCT