Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g02482 ATGAAACCACACAAACTTCCTTCTCCGACAGTCGCACGTGCGCTCGCACGTGCCCTAGGCACCGCCACCACCACACAATGTGATTCGGCGTTTCCTTTGAAGACGGTGACCACCGCAAACTTCGAACCGTCGCTGGGGGAGCTCAAGCGCCACGTCCGGTCGTCGGACTTTGTGGCCATCGACCTCGAGATGAGCGGCGTCACTAGCGCTCCCTGGCGAGAGTCCTTCGAGTTCGACCGCTCTGACGTCCGTTACCTCAAGGTCCGAGACTCCGCCACCAAGTTCGCCGTCGTTCAATTCGGCGTTTGCCCCTTCCGTTGGGATTCCTCAAACCAGTCCTTCGTCGCGTATCCGCACAGTTTCTATGTTTTTCCTCGACAGGAGCATGCAGGTCTGGGTCCGTGTGATGAATTTCTCTGGCAGACCACTTCAATGGATTTCTTGGCTAAATACCAGTTTGATTTCAATGCTTGCATACATGAAGGAATATCTTATTTATCCAGAGAACAAGAAAGGGAAGCGTTAAGGAGTTTGAATTCCACATATGATAGTGAGTGGTCAGACGTTTGTAAATTAAAAGATATTAGGGACGTGCCGTTGCTCAGTGCAGCAGACATTTTGTTCACTGCACGAATGAAAAAAAAATTCCTTGAATGGCGTGATGGGTTATTACACGAGAAAAATCTAGAAGTCCAAATTCAAGGAATTACGGAAGACTCAAAATTTCAAGAGATTTTTTTTGAGATGCATCCAGCTCTTAGGCTTAACGGATTCACCTCTCATCAGCTTAAATTGATTCAGTTGGTCATCAGAAAACATTTCAAAGATCTTTCTTATGTCAGTGTGAACAGTGAGGCTTCCAGTTTACAGCAATTAGTTGTGTATACAGACTCAAAGGATGAATTAAACTTACTTCTGAAAAAAGTGAAAGAAGAAAATCACAGAGCAGAAAAGATGAAAATCGAAGCTGCTGTGGGACTACGCCATGTTATTGACTTCCTTTCATCGGAAAAGAAGTTGATTGTTGGTCACAATTGTTTTCTAGATATTGCTCATGTCCACAGCAAATTTATAGGTCCTCTTCCTGGTACTCCTGAAGAGTTTGTTGCCTCTGTTAACAAGTGCTTTCCGCACATTGTTGACACCAAGATAGTTATGAACACTAATTTTATGCTCCAAGAAAAGATGAAAAAGTCCAGAAAATCACTGGATGCTGCATTCACTTCATTTTGCCCACAAATTGCAACTGGCTCCAGAAGCAGCAGTCTTGGTTCGCTCCCACATGTGAAAGTGGAAGTTGAAGTTGATGAGGCGAGATCATCTAGCTGGAACCCTGGAGGCAAGCATGAGGCAGGATATGATGCCTTTATGACTGGATGCATCTTTGCCCAGTTCTGCAGTGATTTAGGTGTCGATTACAAACTCCACGATTCTTCAAAGCAATTAGCCCTTGATGAGAAACTGCAGAATTATGTTAATCGTCTATATCTTAGTTGGATGCATGGCGACATTATTGATCTAAACACTGGTAATAAGGTTGCAGATTCTTCACCCAGCCATAGCCTCGGGAAGCGGTACCCAAAAATTTTGTTTGAGAACATTGTTATTATTTGGGGATTTCCTTCTACGCTGAAGGCAAATGAAATAAGAGAGGGCATATCTAAAGTATTTGGACCAACTTCTATAGTTTCTGTCTTCCACCTGGATGCAACTGCAGTATTCGTTCAGTTTAGCCAAACAGAACTAGTTTCTGATTTTCTTTCGTTGAAGAGCACCTTGGAGAGAAGTGATGGTGCAATCCTGGTTTTGCATCCACTGTCAAAACTTTTGGAAGGTGGAAATACATGTGCTGCTAATTATGGTAGTTATAAAGAAATTTGTGGTTCACCCTTATCAGAAAGCCTGTTTGCTGATCAGGCAGAGGCAGCTGGTATAAACTGGGAGACCAAATTGACAGAATACAAGGTAGCATTGGGGGCCGAAGAACATGAAAATCCAAGTGTAAGAGGTAATGTAAATATTGCTATGAAGAATGTAGAAAGGACCAACCCAAACGCAATTGATCAATTGAGAAATGCTCAATCTCGGAGACAAGTCTCCACAGATGAGGTTGAAGATTCTTCTTGTGTTGCAGAAGCCAACTTGTGA 2148 0.4334 MKPHKLPSPTVARALARALGTATTTQCDSAFPLKTVTTANFEPSLGELKRHVRSSDFVAIDLEMSGVTSAPWRESFEFDRSDVRYLKVRDSATKFAVVQFGVCPFRWDSSNQSFVAYPHSFYVFPRQEHAGLGPCDEFLWQTTSMDFLAKYQFDFNACIHEGISYLSREQEREALRSLNSTYDSEWSDVCKLKDIRDVPLLSAADILFTARMKKKFLEWRDGLLHEKNLEVQIQGITEDSKFQEIFFEMHPALRLNGFTSHQLKLIQLVIRKHFKDLSYVSVNSEASSLQQLVVYTDSKDELNLLLKKVKEENHRAEKMKIEAAVGLRHVIDFLSSEKKLIVGHNCFLDIAHVHSKFIGPLPGTPEEFVASVNKCFPHIVDTKIVMNTNFMLQEKMKKSRKSLDAAFTSFCPQIATGSRSSSLGSLPHVKVEVEVDEARSSSWNPGGKHEAGYDAFMTGCIFAQFCSDLGVDYKLHDSSKQLALDEKLQNYVNRLYLSWMHGDIIDLNTGNKVADSSPSHSLGKRYPKILFENIVIIWGFPSTLKANEIREGISKVFGPTSIVSVFHLDATAVFVQFSQTELVSDFLSLKSTLERSDGAILVLHPLSKLLEGGNTCAANYGSYKEICGSPLSESLFADQAEAAGINWETKLTEYKVALGAEEHENPSVRGNVNIAMKNVERTNPNAIDQLRNAQSRRQVSTDEVEDSSCVAEANL* 716
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g02482 715 Coils Coil 676 696 - -
Lapu6g02482 715 Coils Coil 299 322 - -
Lapu6g02482 715 SUPERFAMILY Ribonuclease H-like 30 470 IPR012337 -
Lapu6g02482 715 Gene3D - 298 511 IPR036397 GO:0003676
Lapu6g02482 715 MobiDBLite consensus disorder prediction 692 715 - -
Lapu6g02482 715 PANTHER POLY A -SPECIFIC RIBONUCLEASE/TARGET OF EGR1, MEMBER 1 36 628 - -
Lapu6g02482 715 Gene3D - 35 193 IPR036397 GO:0003676
Lapu6g02482 715 Pfam CAF1 family ribonuclease 36 462 IPR006941 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g02482 Lapu-Chr6 24728727 24733277 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g02482 K01148 - gmx:100784997 1171.38
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu6g02482 6 24728727 24733277 Lapu6g02482 6 24728727 24733277 ECH