Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g02480 ATGGAAAGCATTGAGCACACTCCATTGTTTCAGACAAAAAAGGGCAGAGGAAGACTCATCTACAGGTCCTTTGCAATTTCATTATTTGTGTGCATATGCTTCATATGGATTTATAGATTTAGCCATATAATAGATACAAAAGGTGAAGATGGCAAATGGCCATGGCTTGGTATGCTTGGTGCTGAATTGTGGTTTGGCTTTTACTGGGTCCTCACTCAGGCCCTCAGATGGAAGCTTGTCTTCAGACAACCCTTCAGAAACAGACTCACTCAAAGATATGAGAAAAAGTTGCCAGCAGTGGACATCTTTGTGTGCACAGCAGATCCTGATATTGAGCCACCAATGATGGTGATTAATACAGTGCTATCTGTTATGGCTTATGACTATCCAACTGAGAAATTGAATGTGTATCTCTCTGATGATGCTGGATCTCAAATCACGTTCTATGCTCTACTGGAGGCATCAAACTTTGCAAAACATTGGATTCCATTTAGCAAAAGGTTCAAAGTGGAGCCAAGGTCACCAGCTGCATATTTTAAGAGTATAGTCTCATCAGGTTACTCTGGTGATTCTGATCAAGTCATAGAGCTAACGGCTATCAAGAAATTGTACGACGAAATGGAAAGACACATTGAAGATGCAACCAAGTTTGGTGAAGTACCCAAAGAAGCACGTCTAAAGCATCAGGGGTTTTCTCAGTGGGATTCATATTCTTCTCGACGTGACCATGACACAATTCTTCAAATACTACTTCATAAAAAGGACCTTAAGAATTCAAAAGATGTAGAAGGATTCGTTTTACCGGGTCTTGTGTATTTGGCTCGCGAGAAAAGACCCCAATATTTCCACAACTTCAAAGCTGGAGCTATGAATTCATTGTTAAGGGTGTCTTCGAATATTAGTAACGGGAAAATCATTCTAAATGTAGACTGTGACATGTACTCAAACAGTTCAGAGTCTGTGAGAGATGCTCTATGCTTTTTCATGGATGAAGAGAAGGGCCACAAAATTGCTTATGTGCAGTTCCCTCAGATTTTTGAGAACGTCACTAAGAATGATTTGTATGGGAGTAGTCTAATATCAATATCGGAGGTGGAGTTCCCTGGTGCGGATGGTTGTGGTGGTCCTTTGTATATAGGAAGTGGCTGCTTTCACAAGAGAGAGTCTCTTTGTGGATTGAAATTCAGTGATCAATATAGGAATGACTGGAATATCAGTGAAGATTATCAGTTTAAAGAAGCAAACCTGAAGGAACTGGAAGAAGAATCAAAGGCTCTAGCAAGTTGCACCTATGAGGAAAACACCCTATGGGGAAAAGAGATGGGTTTAAGATATGGGTGTCCAGTAGAGGATGTGATAACAGGATTGTCTATTCAGTGCCAAGGATGGGAATCAGTGTACTACAATCCACCAAGGAAGGCTTTCTTAGGGTTAGCTCCAACTACATTGCCTCAAACACTTGTTCAACACAAGAGATGGTCTGAAGGAGACTTGCAAATTTTGCTTTCTAGATATAGCCCTGCATGGTATGGTTTTGGAAGGATCAATTTGGCACTACAAATGGGATATAGTGTTTATTGCTTATGGGCACCTAGCTGTTTTGCAGCACTATATTACTCTATCATCCCTTCATTGTACCTCCTTAAAGGCATTCCCTTGTTTCCAAAGATGTCAAGTCCATGGTTCATACCTTTTGCATATATCATAGTTGGTGAAGCCACTTATAGTTTGTTGGAGTTTTTCTTCTGTGGAGGCACATTTCTAGGTTGGTGGAATGACCTAAGGATATGGCTATACAAGAGAACAAGCTCTTACCTATTTGCCTGCATTGACACCATCTTGAAGCTTTTTGGTTTGTCAGATTCAACTTTTATAATCACAACCAAGGTTACTGAAGAAGAAGCTTCCAAACGCCATGAGAAGGAAATAATGGAGTTTGGAACCTCCTCTCCAATGCTCACTGTATTAGCAACTCTTGCACTGCTCAATTTGTTCTGTTTTCTGAGTGTGTTGAAGAATGCAGTCCTAAAGGGAGGTGGCTTTGGAATTTGTGAGAGAATGGTCTTACAAGTTCTATTATATGAGAAGGTGTTACCAAAAGTAGACATCTTTGTGTGTACAGCAGATCCAGTAATTGAGCCAGCAGTGATGGTGATTAACACAGTGCTATCAGTTATGGCTTATGACTATCCACCAGAGAAACTCAGTGTGTATCTTTCAGATGATGCTGCATCAGATATTACCTTCTATGCTCTCTTAGAAGCTTCAATTTTTGCCAAACAATGGCTTCCATTCTGCAGGAAATTCCAGGTGGACCCCACCTCACCAGCTGCTTATTTTAAAACTATTGCCTCATCCACTCACCCAAATGCTCATGCCAAACAATGCAGAAATTGTACCAAGATATGGAAAGTCGAATAG 2421 0.406 MESIEHTPLFQTKKGRGRLIYRSFAISLFVCICFIWIYRFSHIIDTKGEDGKWPWLGMLGAELWFGFYWVLTQALRWKLVFRQPFRNRLTQRYEKKLPAVDIFVCTADPDIEPPMMVINTVLSVMAYDYPTEKLNVYLSDDAGSQITFYALLEASNFAKHWIPFSKRFKVEPRSPAAYFKSIVSSGYSGDSDQVIELTAIKKLYDEMERHIEDATKFGEVPKEARLKHQGFSQWDSYSSRRDHDTILQILLHKKDLKNSKDVEGFVLPGLVYLAREKRPQYFHNFKAGAMNSLLRVSSNISNGKIILNVDCDMYSNSSESVRDALCFFMDEEKGHKIAYVQFPQIFENVTKNDLYGSSLISISEVEFPGADGCGGPLYIGSGCFHKRESLCGLKFSDQYRNDWNISEDYQFKEANLKELEEESKALASCTYEENTLWGKEMGLRYGCPVEDVITGLSIQCQGWESVYYNPPRKAFLGLAPTTLPQTLVQHKRWSEGDLQILLSRYSPAWYGFGRINLALQMGYSVYCLWAPSCFAALYYSIIPSLYLLKGIPLFPKMSSPWFIPFAYIIVGEATYSLLEFFFCGGTFLGWWNDLRIWLYKRTSSYLFACIDTILKLFGLSDSTFIITTKVTEEEASKRHEKEIMEFGTSSPMLTVLATLALLNLFCFLSVLKNAVLKGGGFGICERMVLQVLLYEKVLPKVDIFVCTADPVIEPAVMVINTVLSVMAYDYPPEKLSVYLSDDAASDITFYALLEASIFAKQWLPFCRKFQVDPTSPAAYFKTIASSTHPNAHAKQCRNCTKIWKVE* 807
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g02480 806 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 691 794 IPR029044 -
Lapu6g02480 806 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 90 177 IPR029044 -
Lapu6g02480 806 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 239 412 IPR029044 -
Lapu6g02480 806 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 7 692 - -
Lapu6g02480 806 FunFam Cellulose synthase isolog 90 186 - -
Lapu6g02480 806 Pfam Cellulose synthase 413 676 IPR005150 GO:0016020|GO:0016760|GO:0030244
Lapu6g02480 806 Pfam Cellulose synthase 701 790 IPR005150 GO:0016020|GO:0016760|GO:0030244
Lapu6g02480 806 Pfam Cellulose synthase 100 398 IPR005150 GO:0016020|GO:0016760|GO:0030244
Lapu6g02480 806 Coils Coil 409 429 - -
Lapu6g02480 806 SUPERFAMILY Nucleotide-diphospho-sugar transferases 110 551 IPR029044 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g02480 Lapu-Chr6 24701166 24720585 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g02480 694 792 Glycosyltransferase AT1G55850 63.636 3.06e-34 138
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g02480 - - gmx:100815825 1202.58
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu6g02480 6 24701166 24720585 Lapu6g02480 6 24701166 24720585 ECH
Lapu6g02480 6 24701166 24720585 Lapu6g02480 6 24701166 24720585 PCT