Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g02476 ATGGATGGTGGAAATCAAGAGGCTGTCAAGCAGTTGCAGTCCCTGATGGAAAATGTGGATGAGCAGCTGAAGAACACATTCCGGAACATGCACCAAGATTATCCAGCAGAAACATTAATGCGGTTTCTCAAAGCAAGGGATTGGAATGTTCCCAAAGCCCATAAAATGTTAATTGATTGTTTGAACTGGAGAGTGGAAAATGAGATAGACAAAGTTTTAACGAAGCCTATACCTGCGGATTTGTATAGAGGCATACGGGATTCTCAACTCCTAGGAATGTCTGGTTACTCAAAGGAGGGTCTACCAGTCATTGCTGTTGGTGTTGGACTCAGTACATATGATAAAGCTTCTGACAAATACTATATACAATCACACATTCAAATTAATGAATATAGGGATCGAGTGATCTTGCCAACAGCTACGAGGAAGCATGAACGATACATTGGCACCTGTCTGAAAGTCTTGGATATGACTGGTTTAAAGTTTTCAGCCCTGAACCAATTGAGGTTGTTGACTGCTATATCTACAATAGATGACTTGAACTACCCGGAAAAGACAGACACATACTATATTGTTAATGCACCATACGTATTCTCCGCATGTTGGAAGGTTGTAAAGCCTCTTTTGCAAGAAAGAACAAGGAGGAAAATCCAGGTGCTGCCAGGTTGTGGGAAGGAGGAATTACTGAAGGTAATGGACTATGCATCCCTCCCACACTTCTGCAGAAAAGAAGATTCCAAGTCATCCAAACATAATGCATCAGGAAACACTGAAAATTGTTTCTCCTTCAATCATGTTTTCCACCAACAACACTACAATCACATCAAGCATCAAGCTATGATTATGGAGTCAATCTCACCACCAATCAGACAAGGGTCCTTCTATGTTGACATACCAGAGCCAGACCCGGATGATGCCAAAATAGCCAAAACCATAGAAACTGAGTTCCACAAATTGGAGAATCAGAAAAAGGGCTTTACCAACTCACGAAATGGTGTGACAGTCAATGGCCATCGAAATACAAGCTACTAA 1032 0.4138 MDGGNQEAVKQLQSLMENVDEQLKNTFRNMHQDYPAETLMRFLKARDWNVPKAHKMLIDCLNWRVENEIDKVLTKPIPADLYRGIRDSQLLGMSGYSKEGLPVIAVGVGLSTYDKASDKYYIQSHIQINEYRDRVILPTATRKHERYIGTCLKVLDMTGLKFSALNQLRLLTAISTIDDLNYPEKTDTYYIVNAPYVFSACWKVVKPLLQERTRRKIQVLPGCGKEELLKVMDYASLPHFCRKEDSKSSKHNASGNTENCFSFNHVFHQQHYNHIKHQAMIMESISPPIRQGSFYVDIPEPDPDDAKIAKTIETEFHKLENQKKGFTNSRNGVTVNGHRNTSY* 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g02476 343 Pfam CRAL/TRIO domain 89 240 IPR001251 -
Lapu6g02476 343 Coils Coil 5 29 - -
Lapu6g02476 343 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 78 249 IPR001251 -
Lapu6g02476 343 SUPERFAMILY CRAL/TRIO domain 80 240 IPR036865 -
Lapu6g02476 343 PANTHER CRAL-TRIO DOMAIN-CONTAINING PROTEIN 1 324 - -
Lapu6g02476 343 SUPERFAMILY CRAL/TRIO N-terminal domain 19 75 IPR036273 -
Lapu6g02476 343 Pfam CRAL/TRIO, N-terminal domain 8 59 IPR011074 -
Lapu6g02476 343 Gene3D - 3 283 IPR036865 -
Lapu6g02476 343 SMART CRAL_TRIO_N_2 35 60 IPR011074 -
Lapu6g02476 343 CDD SEC14 82 240 IPR001251 -
Lapu6g02476 343 SMART sec14_4 85 246 IPR001251 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g02476 Lapu-Chr6 24669128 24674677 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g02476 29 324 Acyl Lipid Metabolism Gene Families AT1G55840 68.013 5.13e-158 442
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g02476 K26544 - gmx:100817955 612.453
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu6g02476 6 24669128 24674677 Lapu6g02476 6 24669128 24674677 ECH
Lapu6g02476 6 24669128 24674677 Lapu6g02476 6 24669128 24674677 PCT