Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g01989 ATGATGGCTGTACCCGTCGAGGAGGCCATTGCTGCTCTATCAACATTCTCGCTTGAGGATGAGCAACCAGAGGTGCAGGGACCTGGAGTGTGGGTGTCAACTGAGAGAGGCGCAACAGAAAGTCCAATAGAGTACAGCGATGTTTCTGCGTACCGACTATCTCTCTCAGAGGACACAAAAGCTCTCAATCAGCTGAATGTCCTTAGCCAAGAGGGAAAGGAGATGGCATCAGTGCTTTACACTTATCGCAGTTGCGTCAAAGCGCTTCCTCAGCTACCTGATTCTATGAAGCAAAGCCAAGCTGACTTATATTTGGAGACATATCAAGTTCTGGATTTGGAAATGAGTCGTCTGCGTGAAATTCAGCGATGGCAAGCATCAGCTTCTTCAAAATTGGCTGCTGACATGCAACGTTTTTCTAGGCCTGAACGACGCATTAATGGCCCTACAATATCTCATTTATGGTCTATGTTGAAGTTGCTTGATGTTTTGGTGCAACTTGATCATCTTAAAAATGCTAAGGCAAGCATACCTAATGACTTTTCATGGTATAAAAGGACTTTTACACAAGTCAGTGGTCAGTGGCAAGACAGCGATTCAATGAGGGAGGAATTAGATGATTTGCAGATTTTCTTGAGCACGAGATGGGCTATTTTGTTGAATTTGCATGTGGAGATGTTCCGTGTGAATAATGTAGAAGACATTCTTCAAGTTCTTATAGTCTTTGTTGTAGAGTCTTTAGAATTGGACTTCGCACTTCTCTTTCCAGAGCGCCACATTCTTTTGCGTGTTTTGCCTGTTCTTGTTGTCCTGGTGACATCATCAGAGAAAGATAGTGAGTCTCTGTACAAGAGGGTGAAAATCAACAGATTGATCAATATATTTAAGAATGAAGCAGTCATTCCTGCATTTCCAGATCTGCATTTGTCTCCTGCTGCAATATTAAAGGAATTATCAACATACTTCCCAAAATTTTCTTCCCAAACTCGCCTTCTTACCCTTCCGGCACCTCATGAGCTTCCACCTCGTGACGCACAAGAATATCAGAGACATTATTTGATCATAAATCATATTGGAGCCATCCGTGCTGAGCATGATGATTTTGTAATTCGATTTGCTTCTGCAATGAATCAGCTGTTATTGTTGAAGTCAACTGATGGTTCTGATGTTGAATGGAGCAAAGAAGTCAAGGGGAACATGTATGACATGATTGTTGAAGGTTTTCAGCTACTAAGCAAATGGACTGCACGCATATGGGAACAATGTGCTTGGAAATTTTCTCGACCATGCAAAGATGCATCCCCATCATTTTCTGACTATGAAAAGGTAGTAAGATATAATTACAGTGCAGAAGAAAGGAAAGCACTGGTTGAGCTTGTGAGCTACATAAAGAGTGTTGGATCTATGATGCAGCGGTGTGATACACTAGTTGCTGATGCTTTATGGGAAACAATACATGCTGAAGTCCAGGATTTTGTCCAAAACACATTAGCTACAATGTTGCGGACTACCTTCAGAAAGAAGAAAGACCTCTCTAGGATTCTTTCAGATATGCGGACCCTTTCAGCTGATTGGATGGCTAATACAAACAAATCAGAATCTGAGTTACAGTCCTCACAGCATGGAGGTGAAGAAAGCAAAGCAAACATATTTTATCCGAGAGCAGTTGCCCCAACTACTGCTCAGGTGCACTGCTTGCAGTTCTTAATATATGAGGTGGTTTCTGGTGGTAACCTTAGGAGGCCAGGCGGACTCTTTGGCAATAGTGGCTCAGAAATCCCAGTTAATGATTTAAAACAGCTGGAGACATTTTTTTACAAGCTTGGTTTTTTCCTTCATATTTTAGACTACTCAGCGACTGTTGCAACATTGACAGATCTTGGTTTCTTATGGTTTAGAGAATTCTATTTAGAGTCTTCGCGAGTCATTCAGTTCCCGATTGAATGCTCTCTTCCTTGGATGTTGGTGGATTGTGTACTTGAGTCACCAAGTTCTGGTCTTCTTGAGAGTGTTCTGATGCCATTTGACATCTATAATGATTCTGCTCAGCAAGCCTTGGTGTTGCTGAAGCAGCGGTTTTTATACGATGAAATTGAGGCTGAGGTGGATCATTGTTTTGATATATTTGTCACAAAATTGTGTGAAACCATTTTCACATATTACAAAAGTTGGGCAGCAAGTGAATTGCTTGATCCTTCATTCCTCTTTGCATCAGACAATGCAGAAAAGTATGCCGTGCAACCCATAAGGCTCAATATGCTGCTTAAAATGACTAGAGTGAAGCTTCTTGGGAGGATGATTAATTTGCGAAGTTTGATCACTGAACGGATTAACAAGGTTTTCCGCGAAAATATTGAGTTTTTGTTTGATCGCTTTGAATGTCAGGATCTGTGTGCCATAGTGGAATTAGAGAAGTTGTTGGATGTCTTAAAACATTCCCATGAACTACTCTCTAGAGATCTTTCTGTAGACTCTTTCAGTCTCATGTTGAATGAGATGCAAGAGAACATCTCCCTTGTATCATTTTCTAGCCGACTGGCCTCACAGATTTGGTCAGAGATGCAAAGCGATTTTTTGCCAAATTTCATTCTCTGCAATACTACTCAACGTTTTATTAGATCATCAAGGACTGTTCCTGTTCAAAAGCCATCTGTACCCTCTGCTAAGCCCAGTTTCTATTGCGGTACTCAGGATTTGAATTCTGCCCATCAAAGTTTTGCACGACTGCATAGTGGATTCTTTGGAATACCTCACATGTTTTCTGTTGTTCGACTTCTGGGATCCCGATCATTACCTTGGCTTATTAGAGCCCTTCTTGATCATTTATCAAACAAGATTACTTTGTTTGAACCAATGATTACAGGATTACAAGAATCGTTGCCAAAATCAATTGGGCTGCTTCCTTTTGATGGAGGTGTGACAGGTTGTGTGAGACTTGTTAAGGAACATCTTAACTGGGAGACAAAATCAGAGTTGAAAGCTGAGGTTCTTCATGGCATAAAAGAGATTGGAAGTGTATTATATTGGATGGGGCTTCTAGATATTGTGTTGAGAGAAAAGGATTCTATGGATTTCATGCAAACTGCTCCCTGGATGGGTTTGCTTCCTGGAGGAGATGGTCAAATAGTAACTTCTCAAGATGGTGAATACAGCCCTGTTGTTAGTCTCTTTAAAGCAACAGCTGCTGCAATGGTTTCATACCCTGGTTGCCCATCACCTGCCTCTTTCCATATTATGTCAAAACAAGCAGAAGCTGCAGATCTTTTATACAAGGCTAACTTGAATACTGGAAGTGTGCTGGAGTATGCACTTGCTTTCACTAGTGCTGCGTTGGATAAATATTGCAGTAAATGGAGTGCTGCACCTAAAACAGGCTTCATTGACATTACAATTTCTAAAGATTTCTATCGAATATACAGTGGCCTCCAAATTGGATACTTGGAAGAGTCTGCTCAAGTGCCATCAAATAGTAATGAAAAGCTGGGAGATTCAGTTGCTTGGGGAGGCTGTACTATTATTTATTTGCTTGGGCAGCAGCTGCATTTTGAGCTCTTTGACTTTTCTTATCAGATCCTCAATATCGCAGAAGTGGAGGCTGTATCTGTTATGCAAACACATAAGAACTCACAATTTGCTGTCCAGGGATGGGAAGCCTTATTGGAAGCAATGAAAAAAGCTAGGAGATTAAATAACCATGTATTCTCTATGCTTAAAGCACGTTGCCCCCTTGAAGAGAAGACAGCTTGTGCTATTAAGCAAAGTGGTGCTCCAATACATCGTATAAAATTTGATAACACAGTTTCAGCATTTGAAACACTGCCGCAGAAAGGTGCTTAA 3837 0.4107 MMAVPVEEAIAALSTFSLEDEQPEVQGPGVWVSTERGATESPIEYSDVSAYRLSLSEDTKALNQLNVLSQEGKEMASVLYTYRSCVKALPQLPDSMKQSQADLYLETYQVLDLEMSRLREIQRWQASASSKLAADMQRFSRPERRINGPTISHLWSMLKLLDVLVQLDHLKNAKASIPNDFSWYKRTFTQVSGQWQDSDSMREELDDLQIFLSTRWAILLNLHVEMFRVNNVEDILQVLIVFVVESLELDFALLFPERHILLRVLPVLVVLVTSSEKDSESLYKRVKINRLINIFKNEAVIPAFPDLHLSPAAILKELSTYFPKFSSQTRLLTLPAPHELPPRDAQEYQRHYLIINHIGAIRAEHDDFVIRFASAMNQLLLLKSTDGSDVEWSKEVKGNMYDMIVEGFQLLSKWTARIWEQCAWKFSRPCKDASPSFSDYEKVVRYNYSAEERKALVELVSYIKSVGSMMQRCDTLVADALWETIHAEVQDFVQNTLATMLRTTFRKKKDLSRILSDMRTLSADWMANTNKSESELQSSQHGGEESKANIFYPRAVAPTTAQVHCLQFLIYEVVSGGNLRRPGGLFGNSGSEIPVNDLKQLETFFYKLGFFLHILDYSATVATLTDLGFLWFREFYLESSRVIQFPIECSLPWMLVDCVLESPSSGLLESVLMPFDIYNDSAQQALVLLKQRFLYDEIEAEVDHCFDIFVTKLCETIFTYYKSWAASELLDPSFLFASDNAEKYAVQPIRLNMLLKMTRVKLLGRMINLRSLITERINKVFRENIEFLFDRFECQDLCAIVELEKLLDVLKHSHELLSRDLSVDSFSLMLNEMQENISLVSFSSRLASQIWSEMQSDFLPNFILCNTTQRFIRSSRTVPVQKPSVPSAKPSFYCGTQDLNSAHQSFARLHSGFFGIPHMFSVVRLLGSRSLPWLIRALLDHLSNKITLFEPMITGLQESLPKSIGLLPFDGGVTGCVRLVKEHLNWETKSELKAEVLHGIKEIGSVLYWMGLLDIVLREKDSMDFMQTAPWMGLLPGGDGQIVTSQDGEYSPVVSLFKATAAAMVSYPGCPSPASFHIMSKQAEAADLLYKANLNTGSVLEYALAFTSAALDKYCSKWSAAPKTGFIDITISKDFYRIYSGLQIGYLEESAQVPSNSNEKLGDSVAWGGCTIIYLLGQQLHFELFDFSYQILNIAEVEAVSVMQTHKNSQFAVQGWEALLEAMKKARRLNNHVFSMLKARCPLEEKTACAIKQSGAPIHRIKFDNTVSAFETLPQKGA* 1279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g01989 1278 Pfam Cytoplasmic Fragile-X interacting family 400 1237 IPR008081 GO:0030833|GO:0031267
Lapu6g01989 1278 Pfam CYRIA/CYRIB Rac1 binding domain 157 219 IPR009828 GO:0031267
Lapu6g01989 1278 PIRSF CYFIP 1 1278 IPR008081 GO:0030833|GO:0031267
Lapu6g01989 1278 PRINTS Cytoplasmic fragile X mental retardation protein interacting protein signature 258 273 IPR008081 GO:0030833|GO:0031267
Lapu6g01989 1278 PRINTS Cytoplasmic fragile X mental retardation protein interacting protein signature 1134 1150 IPR008081 GO:0030833|GO:0031267
Lapu6g01989 1278 PRINTS Cytoplasmic fragile X mental retardation protein interacting protein signature 135 164 IPR008081 GO:0030833|GO:0031267
Lapu6g01989 1278 PRINTS Cytoplasmic fragile X mental retardation protein interacting protein signature 437 455 IPR008081 GO:0030833|GO:0031267
Lapu6g01989 1278 PRINTS Cytoplasmic fragile X mental retardation protein interacting protein signature 749 779 IPR008081 GO:0030833|GO:0031267
Lapu6g01989 1278 PRINTS Cytoplasmic fragile X mental retardation protein interacting protein signature 624 642 IPR008081 GO:0030833|GO:0031267
Lapu6g01989 1278 PRINTS Cytoplasmic fragile X mental retardation protein interacting protein signature 691 713 IPR008081 GO:0030833|GO:0031267
Lapu6g01989 1278 PANTHER CYTOPLASMIC FMR1-INTERACTING PROTEIN-RELATED 3 1269 IPR008081 GO:0030833|GO:0031267
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g01989 K05749 - gmx:100775991 2474.51
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu6g01989 6 19649290 19673170 Lapu6g01989 6 19649290 19673170 ECH