Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g01871 ATGGAATTTCAATCTCCAACTTCTCGCCCTACCCGGAGTGATGTCGTTTTGAACCACCATCCACCATTTCCGATCATTCACCGGTTTCTGTTGCCGCCGCCGCCGCCGCCATCATCCTCCACGGTGCTGCTTCCGATATCTTTCAATCCCTCACTTTTCATCACGATGGATAATCAAAGGTCCTTTTCTCTGCTTCGGTTCATGGCTGATGAGGGACTTGTTCCGTCGCTAGAAGAGGAAGATAAACGAAAAAATGTTATTCGGAAGCTTAAACAGGTAGTCTCATCGTGGATCAAGAAGGTGGCATGCCTGCATCAACTACCAGAGCACCAAATTGCTGTTACATCTGCCACAATATTGACTTATGGATCTTATGGCCTCGGAGTTCACAGCTCAGGGTCTGACATTGATGCTTTGTGTGTTGCTCCTTTCTTTGCCTCAATTGCTGAAGACTTTTTTGTTGTATTGCATGACATGCTTAAAAGAAGGTCTGAAGTATCATACATTCACTGTGTCAAGAGTGCAAAAGTCCCTTTGATGCGATTTAAATTCGAAGGGATTTCAATTGATCTTCCATATGCTCGACTTAATGTACTATATGTTCCTGAGAATGTTGACATATTAAATCCATTTTTCATGAGGAATATTGATGATACCAGCTGGAAAAGTTTGTCAGGGGTACGAGCAAATAAATACATTCTCCATCTAGTTCCTAATATAGAGAATTTTCAATGCATGCTACGATGTCTTAAACTGTGGGCAAAAAGGCGAGGAGTTTATGGAACCTTGCTTGGTTATTTGGGAGGAGTTCATATGACAGTTCTTGCAGCATATGTTTTTCTAAGACACCCTGATGCCACCTTAAATGCTCTAATTATGAACTTTTTTCAAACATTTGCCTTTTGGCCCTGGCCTACTCCAGTGATGTTGCAGGAAGGAATGTTAACAGTCATGGATGGGATAGAAACACGGTCCTTCATGCCTATATTTCTGCCATCTAGCCGTTATGAGTATTGTCATACAAATATTACTAAAAGCACTTTCTTTCGGATCAGGACTGAGTTTCTTCGTGGACATGATATGACAAAGGATATTTTGAAACCTGATTTCAATTGGGATAATGTATTCGAGCCTTTTCCATACTCAACAAGGTACTCCCAATTTGTCAAAATTTATCTCTCTTCTGCTAACCATCATGCACTGGCAGAATGGGTTGGTTGGGTAAAGTCACGCTTTCGAGGTCTTCTTGTACATCTGGAGGTTATTCAAGGATTTTGTGACCCTAACCCTACAGAATATGTTGATAGTGAGAAAACGGAGCCAAATGTAGTTTTCTACTGGGGTTTGCACCCTACTAAGAATAATTTCCTGGACATTGATTCGGTAAAGGGGGAGTTCATGAAGATCATAAAGAATGGCTATGAAGGTTCTCCTGGGAGGATGGAGATGTCCGTCCTGTTAGCTTCTCAGCTGCCTAATTGA 1482 0.417 MEFQSPTSRPTRSDVVLNHHPPFPIIHRFLLPPPPPPSSSTVLLPISFNPSLFITMDNQRSFSLLRFMADEGLVPSLEEEDKRKNVIRKLKQVVSSWIKKVACLHQLPEHQIAVTSATILTYGSYGLGVHSSGSDIDALCVAPFFASIAEDFFVVLHDMLKRRSEVSYIHCVKSAKVPLMRFKFEGISIDLPYARLNVLYVPENVDILNPFFMRNIDDTSWKSLSGVRANKYILHLVPNIENFQCMLRCLKLWAKRRGVYGTLLGYLGGVHMTVLAAYVFLRHPDATLNALIMNFFQTFAFWPWPTPVMLQEGMLTVMDGIETRSFMPIFLPSSRYEYCHTNITKSTFFRIRTEFLRGHDMTKDILKPDFNWDNVFEPFPYSTRYSQFVKIYLSSANHHALAEWVGWVKSRFRGLLVHLEVIQGFCDPNPTEYVDSEKTEPNVVFYWGLHPTKNNFLDIDSVKGEFMKIIKNGYEGSPGRMEMSVLLASQLPN* 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g01871 493 PANTHER POLY A POLYMERASE 55 492 - -
Lapu6g01871 493 SUPERFAMILY Nucleotidyltransferase 45 234 IPR043519 -
Lapu6g01871 493 Gene3D Beta Polymerase, domain 2 75 231 IPR043519 -
Lapu6g01871 493 PIRSF PolyA_polymerase 37 490 IPR014492 GO:0005634|GO:0043631|GO:1990817
Lapu6g01871 493 Gene3D Poly(A) polymerase predicted RNA binding domain 381 487 - -
Lapu6g01871 493 CDD NT_PAP_TUTase 82 197 - -
Lapu6g01871 493 Gene3D - 55 376 - -
Lapu6g01871 493 SUPERFAMILY PAP/OAS1 substrate-binding domain 238 378 - -
Lapu6g01871 493 Pfam Nucleotidyltransferase domain 116 183 IPR002934 GO:0016779
Lapu6g01871 493 FunFam Nuclear poly(A) polymerase 3 381 486 - -
Lapu6g01871 493 FunFam Poly(A) polymerase alpha, putative 75 231 - -
Lapu6g01871 493 Pfam Poly(A) polymerase central domain 55 378 IPR007012 GO:0043631|GO:1990817
Lapu6g01871 493 SUPERFAMILY PAP/Archaeal CCA-adding enzyme, C-terminal domain 379 491 IPR011068 GO:0003723|GO:0016779|GO:0031123
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g01871 Lapu-Chr6 18547777 18562693 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g01871 K14376 - mof:131152071 630.943
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu6g01871 6 18547777 18562693 Lapu6g01871 6 18547777 18562693 ECH