Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g01868 ATGGACGCGTTGTCACTGCTTCAGGGTTCTTCTCTTGCACCTTCTTATCCCCTCCATAAGCTTTCAAAAACCACCATGACGACATCCAACTGCGTAAGATTTAATTTCAATCACAACCCATGCCTCATATTCGCAAATGGGTACCCTACTTCTTCTTCTTTGCTTCCATTTTCTTTTCACAATAAGCCCAGAAAATCAGCATCACTGATTGTGAGTGCTCGCAAGAAAGACAAGAAAGATGATGCCCATAGCTCCGTACCCCAACCTGACGAGGCCACGGGTTTCTTCCCCGAAGCTGTGTTACTTAAAAAGAGAACAGTTGAGGAAGAAGGGAAGCTTCTCCCGGAGTTTGAAGATGCCGAGGAAAGAGAACTCTTTGAAACGTTGATGCTTGAGCTGGAAAGTGATCTGAATGCTGAAATATTGCGCCATTATGAGGTCATGTACTTAATTCATGAGAAGCATGAAGATGAGGTTGCAGCTGTCAATGAGAAAATTCAAGACTTTATGAGGGAGAAGAAAGGCCAGGTTTGGAGGCTGAATGATTGGGGTGTGAGAAGGTTAGCTTACAAAATAAAGAAAGCTAATAAAGCCCACTACATGTTGATGAACTTCGAGCTGGATGCAAAATATATCAACGACTTCAAGACTTTGTTGGACCAAGATGAAAGAGTTATTCGGCATCTTGTGATAAAGAGAGAGGAGGCAATAACTGAAGATTGCCCTCCTCCTCCTGAGTTTCATAATCTGCGTGCAAATGCAGATGATGATGATGAAGAAGAATTCGACGAAGAGTATGATGATGACTGGGATGGTGAAGATGAGGTGGATGATGATGGTATTATATTTGTAGATGGTGATGAGGACGAGTACGAGGATGACATGGAATCAAGAAATGAGCATCTGCAAATGTTAGAGAAGCAGAAGAAATAA 933 0.4234 MDALSLLQGSSLAPSYPLHKLSKTTMTTSNCVRFNFNHNPCLIFANGYPTSSSLLPFSFHNKPRKSASLIVSARKKDKKDDAHSSVPQPDEATGFFPEAVLLKKRTVEEEGKLLPEFEDAEERELFETLMLELESDLNAEILRHYEVMYLIHEKHEDEVAAVNEKIQDFMREKKGQVWRLNDWGVRRLAYKIKKANKAHYMLMNFELDAKYINDFKTLLDQDERVIRHLVIKREEAITEDCPPPPEFHNLRANADDDDEEEFDEEYDDDWDGEDEVDDDGIIFVDGDEDEYEDDMESRNEHLQMLEKQKK* 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g01868 310 FunFam 30S ribosomal protein S6 142 236 - -
Lapu6g01868 310 NCBIfam 30S ribosomal protein S6 143 234 IPR000529 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Lapu6g01868 310 Pfam Ribosomal protein S6 144 232 IPR000529 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Lapu6g01868 310 Coils Coil 152 172 - -
Lapu6g01868 310 MobiDBLite consensus disorder prediction 240 310 - -
Lapu6g01868 310 MobiDBLite consensus disorder prediction 72 92 - -
Lapu6g01868 310 ProSitePatterns Ribosomal protein S6 signature. 184 193 IPR020815 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Lapu6g01868 310 CDD bS6 144 233 IPR020814 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Lapu6g01868 310 PANTHER MITOCHONDRIAL 28S RIBOSOMAL PROTEIN S6 137 253 IPR000529 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Lapu6g01868 310 MobiDBLite consensus disorder prediction 296 310 - -
Lapu6g01868 310 Hamap 30S ribosomal protein S6 [rpsF]. 142 235 IPR020814 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Lapu6g01868 310 MobiDBLite consensus disorder prediction 256 295 - -
Lapu6g01868 310 Gene3D - 138 240 IPR014717 -
Lapu6g01868 310 Coils Coil 288 310 - -
Lapu6g01868 310 MobiDBLite consensus disorder prediction 72 86 - -
Lapu6g01868 310 SUPERFAMILY Ribosomal protein S6 142 242 IPR035980 GO:0003735|GO:0005840|GO:0006412|GO:0019843
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g01868 - - gmx:100790128 443.351
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu6g01868 6 18527576 18530914 Lapu6g01868 6 18527576 18530914 ECH