Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g01610 ATGGGAAACATGTCAAATGTGGTCGTCTTCTGTTTCTGTCTCTGGACCCTCTTGTTTTCTCTGGCGTCATCTGCACCCAACGATGGCTTGCGCAGGATTGGACTGAAAAAAATCAAATTGGACAGCGATGACCTTATGCGGTTTAAGGAATTGCGCTCTGCAGCTAGAAAGTATGATCTCCAGAACATTCTTGGAGGCGCTGAGGGTACCGACATTGTTGCGTTGAAGAACTACTTGGATGCTCAGTACTACGGTGAAATAGCCATTGGTACCCCTCCTCAGACGTTCACTGTGATTTTTGACACGGGTAGCTCTAATTTGTGGGTGCCATCTTCTAAATGTTACCTCTCGATTGCTTGTTTCACGCATGCTAAGTACAAGTCTAGCCAATCCAGTACCTACAAGGAAAATGGGACTTTTGCTGCAATTGAATACGGTAGTGGCAAAATTTCTGGTTTCTTTAGCAATGACAATGTCAGAGTTGGTGACGTAGCTGTAAACAGCCAGGCATTCATTGAAGCAACTAGAGAACCTGGAGTTACATTTGTGGCAGCTAAGTTTGATGGTATACTAGGACTTGGATTTCAAGAGATATCAGTAGGAAATGCTGTTCCAGTGTGGTACAATATGGTTGAACAAGGTCTTGTAAAGGATCCAGTATTTTCATTTTGGTTAAATCGTAAACCAGAAGAAGAGAACGGGGGTGAAATTGTTTTTGGTGGTGCTGATTCTGCTCACTACAGGGGCAAACATACTTATGTGCCAGTGACAAGAAAAGGATATTGGCAGTTTGACATGGGAGAGGTGCTTATTGCTGGTAAACCCACTGGATTCTGTGCTAGTGACTGTTCTGCAATTGCAGACTCTGGAACTTCTTTGTTGGCTGGTCCAACGACTATAATTACTGAGATAAATCAAGCAATCGGAGCATCTGGAGTTGTAAGCAGAGAATGCAAGTCTGTTGTCGAACAGTATGGGCAAACAATCTTGGAATTGCTCTTAGCTGAAGCAAAGCCTAAAAAGATCTGCTCACAAATTGGATTGTGTTCCTTTGATGGGACTCGTGGTGTTAGGAGTTTCAATTTTTTCATTAGCATGGGCATTGAGAGTGTGGTGTATAAGAACGAAAGAAAATCATCTGCTGGCATTCGCGATGCTGCTTGTTCAACATGTGAGATGGCTGTTATTTGGATGCAAAACCAGCTGAGGCAGAATCAGACAGAAGATCATATAATAGACTATGTCAATGGGCTTTGTGACAAGTTGCCCAGCCCAATGGGACAATCATCTGTTGATTGTGGAAAACTCTCTTCAATGCCTATTGTTTCCTTCACTCTTGGTGGAAAAGTTTTTGACCTTTCCCCAAAGGAGTATATACTGAAGACGGGAGAAGGTCCTGAAGCCCAATGCATCAGTGGCTTCATTGCTCTGGATGTGCCTCCTCCTCGTGGCCCTCTATGGATCCTTGGAGACGTCTTCATGGGGCGCTATCATACCATCTTTGATTATGGTCAGCAGAAAGTCGGATTTGCCGAAGCAGCATAG 1545 0.4388 MGNMSNVVVFCFCLWTLLFSLASSAPNDGLRRIGLKKIKLDSDDLMRFKELRSAARKYDLQNILGGAEGTDIVALKNYLDAQYYGEIAIGTPPQTFTVIFDTGSSNLWVPSSKCYLSIACFTHAKYKSSQSSTYKENGTFAAIEYGSGKISGFFSNDNVRVGDVAVNSQAFIEATREPGVTFVAAKFDGILGLGFQEISVGNAVPVWYNMVEQGLVKDPVFSFWLNRKPEEENGGEIVFGGADSAHYRGKHTYVPVTRKGYWQFDMGEVLIAGKPTGFCASDCSAIADSGTSLLAGPTTIITEINQAIGASGVVSRECKSVVEQYGQTILELLLAEAKPKKICSQIGLCSFDGTRGVRSFNFFISMGIESVVYKNERKSSAGIRDAACSTCEMAVIWMQNQLRQNQTEDHIIDYVNGLCDKLPSPMGQSSVDCGKLSSMPIVSFTLGGKVFDLSPKEYILKTGEGPEAQCISGFIALDVPPPRGPLWILGDVFMGRYHTIFDYGQQKVGFAEAA* 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g01610 514 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 98 109 IPR001969 GO:0004190|GO:0006508
Lapu6g01610 514 ProSiteProfiles Saposin B type domain profile. 384 425 IPR008139 -
Lapu6g01610 514 Gene3D Acid Proteases 243 514 IPR021109 -
Lapu6g01610 514 PANTHER BETA-SITE APP-CLEAVING ENZYME, ISOFORM A-RELATED 20 512 IPR001461 GO:0004190|GO:0006508
Lapu6g01610 514 Pfam Saposin-like type B, region 2 317 349 IPR008138 -
Lapu6g01610 514 ProSiteProfiles Saposin B type domain profile. 313 353 IPR008139 -
Lapu6g01610 514 FunFam Lysosomal aspartic protease 358 513 - -
Lapu6g01610 514 Pfam Saposin-like type B, region 1 387 423 IPR007856 GO:0006629
Lapu6g01610 514 ProSiteProfiles Peptidase family A1 domain profile. 83 511 IPR033121 -
Lapu6g01610 514 Pfam Eukaryotic aspartyl protease 82 513 IPR033121 -
Lapu6g01610 514 SMART sapb_4 386 470 IPR008139 -
Lapu6g01610 514 SMART sapb_4 277 349 IPR008139 -
Lapu6g01610 514 CDD phytepsin 73 512 IPR033869 GO:0004190
Lapu6g01610 514 SUPERFAMILY Acid proteases 11 513 IPR021109 -
Lapu6g01610 514 SUPERFAMILY Saposin 314 423 IPR011001 -
Lapu6g01610 514 FunFam Lysosomal aspartic protease 69 311 - -
Lapu6g01610 514 Gene3D - 313 423 - -
Lapu6g01610 514 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 285 296 IPR001969 GO:0004190|GO:0006508
Lapu6g01610 514 Gene3D Acid Proteases 31 241 IPR021109 -
Lapu6g01610 514 PRINTS Pepsin (A1) aspartic protease family signature 235 248 IPR001461 GO:0004190|GO:0006508
Lapu6g01610 514 PRINTS Pepsin (A1) aspartic protease family signature 487 502 IPR001461 GO:0004190|GO:0006508
Lapu6g01610 514 PRINTS Pepsin (A1) aspartic protease family signature 285 296 IPR001461 GO:0004190|GO:0006508
Lapu6g01610 514 PRINTS Pepsin (A1) aspartic protease family signature 89 109 IPR001461 GO:0004190|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g01610 Lapu-Chr6 15975839 15980615 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g01610 K08245 - gmx:100801598 894.804
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu6g01610 6 15975839 15980615 Lapu6g01610 6 15975839 15980615 ECH
Lapu3g00119 3 1450526 1456070 Lapu6g01610 6 15975839 15980615 PCT