Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g01388 ATGGAGGGCAAAATCTTGGATCATCAGAATCTGGTGCAAGTTGTAGAAAATTTATCTCCAGGGCTTTCTAGTTTCTCCCTTAGTGACCAGACATCCAATTCCGATTCTCTGGATGATGAGGTGGGTGATAGGAGGAGGAATTGCGATACTAAAGAGTGTTTTCACTCTTTTTCCGCTGATAGCAGTGGACAGTATTCTATAAATTCTTCTAGATTATATCCTGAATTCCCCGAAAAACAATTGGAAAAACATAACGAAGATATGGAGTCTTCAGCTAATCTTCAGAAGCAGGGAAGGTACTTCTATTACGATACTCCACTGCAGGAAGATACCGGAGTTTGGATACCAGTTTCAGTTCCACCTATGTTGGAAGATGATCATAAAGAGTGGGCCAAAGGTTTTCACTCAAACGGTGGCTATTTTCCTGATGATGACTTGGGGTGGAATCAATATGTTGGAGATGAAAGGGAAATGACTATGTGGGATGTGCTAACAGAAATGTTACTTGCGGCTCGGGGAAAAGTGACTTCTTTGGCATCAGGAGATATTCATATGTGTAATTTTTCGTGGATATCCAGCCATGTACTACTTGAAGAAGCTTGGAGAGAGATGGCACAAACACTTGCTGAGGCCAATTTTGGTAATGTAAAGGAACTATTAGAAGCGGAGCCTCCAAAATGGTTAGCTGATAGTGCTGCTTCTTCTTGTATGCTTTGTGGTGTGAGGTTTCATCCCATTGTGTGCTCTCGACATCACTGCCGGTTCTGTGGAGGAATATTTTGTGGTGAGTGCTCTAAAGGGCGGAGCTTGTTGCCATCCAAATTCCGAGTTTCTGACCCCCAGAGAGTATGTGATGTATGCTGTGTCCGACTCGAGTCTGTACAACCTTATTTGATGGATCATGTAAGCAATGCTGCTCAGTTGCCAACCCATGACCTGACAGATCTGAGCACTTTGAGATCTTGGGTTAATTTTCCTTGGGGGCAGTCCATGGAATATGAAATTTACAAGGCAACTAACACTATCAGGGCTTATAATCAGATTGGTTTTCTAAAGCCCGAAAAGTCAATTCCAGATGTCATTCTAAGAAAAGCGAAAGGCCTTGCAATTGTTACTGTGGTCAAAGTAGGAGTGGTGGTTACGTATAATATTGGAACCGGACTTGTGGTTGCACGTAAGGAAGATGGTTCATGGTCTGCTCCATCTGCTGTGTCCACCTTTGGTGTAGGGTGGGGGGCTCAGGCTGGAGGAGAGTTGACAGACTTTATTATTGTCTTGAGAACAAATGATGCTGTCAAGACATTTAGTGGCAATATGCATATTTCACTTGGAGCTGGTTTGAGTGCTGCAGTAGGCATTGTTGGTAGATCAGTTGAAGCTGATGTTCGAGCTGGTGACGGTGGTTATGCTGCTTGTTATACATACAGCTGCAGTAAAGGTGCATTTGTTGGATGTTCACTTGAAGGGAGTATAGTGACTACTCGCACGCAAGAAAATTCCCGTTTCTATGGCAGCCAGTCTATAGCTGCAACAGACATACTTGGCTCGTTGCCTAGACCACCTGCTGCTGCCATTCTCTACCATGCACTTACTGATCTCTATTCGAAGCTTGATGGGTGA 1620 0.4383 MEGKILDHQNLVQVVENLSPGLSSFSLSDQTSNSDSLDDEVGDRRRNCDTKECFHSFSADSSGQYSINSSRLYPEFPEKQLEKHNEDMESSANLQKQGRYFYYDTPLQEDTGVWIPVSVPPMLEDDHKEWAKGFHSNGGYFPDDDLGWNQYVGDEREMTMWDVLTEMLLAARGKVTSLASGDIHMCNFSWISSHVLLEEAWREMAQTLAEANFGNVKELLEAEPPKWLADSAASSCMLCGVRFHPIVCSRHHCRFCGGIFCGECSKGRSLLPSKFRVSDPQRVCDVCCVRLESVQPYLMDHVSNAAQLPTHDLTDLSTLRSWVNFPWGQSMEYEIYKATNTIRAYNQIGFLKPEKSIPDVILRKAKGLAIVTVVKVGVVVTYNIGTGLVVARKEDGSWSAPSAVSTFGVGWGAQAGGELTDFIIVLRTNDAVKTFSGNMHISLGAGLSAAVGIVGRSVEADVRAGDGGYAACYTYSCSKGAFVGCSLEGSIVTTRTQENSRFYGSQSIAATDILGSLPRPPAAAILYHALTDLYSKLDG* 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g01388 539 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 216 302 IPR013083 -
Lapu6g01388 539 SMART fyve_4 222 293 IPR000306 GO:0046872
Lapu6g01388 539 MobiDBLite consensus disorder prediction 23 44 - -
Lapu6g01388 539 PANTHER SH3YL1 PROTEIN 190 537 - -
Lapu6g01388 539 Pfam Las17-binding protein actin regulator 408 531 IPR007461 -
Lapu6g01388 539 CDD SYLF_FYVE 333 533 - -
Lapu6g01388 539 FunFam Zinc finger family protein 216 298 - -
Lapu6g01388 539 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 230 292 IPR017455 -
Lapu6g01388 539 SUPERFAMILY FYVE/PHD zinc finger 225 304 IPR011011 -
Lapu6g01388 539 Pfam FYVE zinc finger 226 291 IPR000306 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g01388 Lapu-Chr6 13650813 13655038 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g01388 227 310 EF-hand Containing Proteins AT3G14270 34.831 7.70e-08 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g01388 K20523 - gmx:100813648 964.911
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu6g01388 6 13650813 13655038 Lapu6g01388 6 13650813 13655038 ECH