Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g01257 ATGGATGCTCACATTACTGATTTGGATTGGGAGACTTCTAGTGACAGCAGCAGCAGCAGCAGTGAGGATCAAGAGGATACTGATTTTCAATACGGTGGACAAGCTCGGAGCATATTATCAAGTTTAGAGGAAAGCATTGGGAAGATTGATGATTTTCTCTCATTTGAGAGGGCATTTGTCCATGGGGATGTGGTCTGTGCCTCCTCAGACCCATCCGGGCAGATGGGGAGGGTCACAAGTGTTGATGTGTTAGTGGATTTGGAAAGTGTTCAAGGAAAGAAATTAAAAAATGTGAACTCCAAGAAACTTCTGAAGATTCGCTCCATTTCAGAAGGTGATTACGTAATTAAGGGGCCATGGATTGGTCAGATTCAAAGGGTAGTAGACAGAGTGATTATATTGTTTGATGATGGAACTAAATGTGAGGTCATTACCTTGGAAAAAGATCAGCTTTTACCACTGACTCATAATCTTCTTGAAGATTCACAGTATCCGTACTATCCAGGGCAGAGAGTCAAGGTCAAGACCTCCACAGCTTCTAAACCAGCTAGATGGATGTGTGGCACCTGGAAAGACAATCATGGTGAAGGAATTGTTTGTGCTGTGGAAGCTGGTTTGGTGTGTGTTAATTGGATTGCCTCTGTTCTTTTGGGTTTCAATTTGAATGAAAATGTTCCTTTATGCTGGCAAGATTCAAAAAACTTGACCTTGTTGTCCTGTTTTTCACATACAAACTGGCAACTTGGTGATTGGTGCATGCTCCCACCTGTGGACCAAAAGGAACAGATGATTCAAGATGGCTCTACATGTTATTCTCATGACGAGCATAATATAGCTAGAGGATATAAAACGAGAAATATTAACCCTAACACGGGGGAATTATTTATAATTGAGAAGATAAAAACCGAAGTTGATATTGTTTGGCAAAATGGTGAACATACTTTGGGATTAGATCCACTTAACTTAATCCCAGTGAATGTCATAAACAGTCATGAATTTTGGCCCCAGCAGTTTGTGCTGGAAAAAGGGGCTTCTGATGATCCTCTCAAACCTAGCAATCAAAGATGGGGTGTTGTTCTTTCCATGGACGCAGAAGAGCACACTGTAATGGTACAATGGAGAACTGCTCCCACAGCCGAGACAGATAATTTGACTGGAGATGCAATGATGGAAACTGTGAGTGCCTACGAACTACTCGAGCATCCAGATTATTCTTGTTGTTTTGGTGATATTGTGTTCAAGGCGGCTCAAAAACAGCTTGGTGACCAAGCTGACCAAGATAATGTGAAGTCGGTGACTGATGTGAATGTAGAGGCTCCTCTGATAAACCGGAACCTAATCAGTTATCAGAATAAATCTGTAGATAACAGTTACCTCTCATGCATTGGCAATGTTACTGGTTTCATAGATGGTGATGTAGAGGTCAAATGGGCTACTGGTTTAACAACAAAGGTTGCACCTTATGAAATTTTTAGAATTGATAAGCATGAAGGTTCAACTGCAACCCCTGTTCCTTATGAAGCAAATGTTGAGGAGTTCTCTCAAGAGATGATTGAACATAGAAGTCTTCCATCAGACCAGAAGGGAAAGACTTTGTTAGATTGTAATGGCGATAGAGATAATTGTGAAAAGCATCCAGGAGAGAGTAGTTCCTCATCCCTTCCTCAAGCTGCCTTTGAACTTTTCTCCAGCATTAAGGCCAGCATAATCAAAACACTTGGTGTAGCATCACTTTCCAGAAAATTCTCCCCAATCCCTAGGTTTGAAGAGGGAAATGAATCTACTTGTCTTGATAAGAAAGATTTGGACACTTGTGGCCCTGACACTGAATCACATTTGGTGAGCAAGCTGCACTCTTCTGAAGGCATAACTCCATATTGTGAAGCTATTAGGACTCATGAGAGGAATGAATTTCCAGTCTCTTTGGACAACAACAGTTCAGATCAGTTGAAGCAGTTTGATGTAATCGATAATTGCTCAGACCACCACTTTTTCTATGAGGGGAAGGGATTGTCGTTATCTCAGGTAAAAAAGGATTGGGTGAAGAAGGTACAACAAGAATGGAGCCTCCTGGAAAAAAATCTCCCTGAAACTATATATGTCCGTGTCTTTGAAGAAAGAATGGATCTCATGCGAGCTGCCATTGTGGGCGTGTCTGGGACACCTTACCATGATGGATTGTTTTTCTTTGATATACATTTCCCTTCAGAGTATCCCAGCCAACCCCCGATGGTGCATTACAATTCTGGTGGACTGCGATTAAATCCTAATCTGTATGAGTCGGGTAAAGTCTGTTTGAGTCTCCTAAATACGTGGACCGGTACAGCTGCCGAAGTTTGGAACCCTGGAACTTCAACAATTCTTCAAGTCCTTCTTTCTCTGCAGGCCCTTGTCCTTAATGAGAAGCCTTATTTCAACGAGGCTGGATATGATGAACAAATTGGTAGAGCAGAAGGGGAGAGAAACTCAGTTAGTTACAATGAGAATGCTTTCCTTGTCACCTGCAAATCCATTTTGTATCTATTAAGAAAGCCTCCCAAGCATTTTGAGGCATTGGTGGAGGAGCACTTTAGACAACGTTCCAAACATATACTTCTGGCTTGTAAGGCATATCTTGAAGGAGCTCCTATTGGATGTGCTTTTGGTGGTGGAAAAACTCAGAATGAAAACCAAAAGGGAACTTCTACTGGATTTAAGATCATGCTTGCTAAGCTCTTCCCCAAGCTTGTGGAGGCATTTTCTGACAAGGGCATTGATTGCAGTCAGTTTGCTGAGATGCAAAAGTAA 2787 0.418 MDAHITDLDWETSSDSSSSSSEDQEDTDFQYGGQARSILSSLEESIGKIDDFLSFERAFVHGDVVCASSDPSGQMGRVTSVDVLVDLESVQGKKLKNVNSKKLLKIRSISEGDYVIKGPWIGQIQRVVDRVIILFDDGTKCEVITLEKDQLLPLTHNLLEDSQYPYYPGQRVKVKTSTASKPARWMCGTWKDNHGEGIVCAVEAGLVCVNWIASVLLGFNLNENVPLCWQDSKNLTLLSCFSHTNWQLGDWCMLPPVDQKEQMIQDGSTCYSHDEHNIARGYKTRNINPNTGELFIIEKIKTEVDIVWQNGEHTLGLDPLNLIPVNVINSHEFWPQQFVLEKGASDDPLKPSNQRWGVVLSMDAEEHTVMVQWRTAPTAETDNLTGDAMMETVSAYELLEHPDYSCCFGDIVFKAAQKQLGDQADQDNVKSVTDVNVEAPLINRNLISYQNKSVDNSYLSCIGNVTGFIDGDVEVKWATGLTTKVAPYEIFRIDKHEGSTATPVPYEANVEEFSQEMIEHRSLPSDQKGKTLLDCNGDRDNCEKHPGESSSSSLPQAAFELFSSIKASIIKTLGVASLSRKFSPIPRFEEGNESTCLDKKDLDTCGPDTESHLVSKLHSSEGITPYCEAIRTHERNEFPVSLDNNSSDQLKQFDVIDNCSDHHFFYEGKGLSLSQVKKDWVKKVQQEWSLLEKNLPETIYVRVFEERMDLMRAAIVGVSGTPYHDGLFFFDIHFPSEYPSQPPMVHYNSGGLRLNPNLYESGKVCLSLLNTWTGTAAEVWNPGTSTILQVLLSLQALVLNEKPYFNEAGYDEQIGRAEGERNSVSYNENAFLVTCKSILYLLRKPPKHFEALVEEHFRQRSKHILLACKAYLEGAPIGCAFGGGKTQNENQKGTSTGFKIMLAKLFPKLVEAFSDKGIDCSQFAEMQK* 929
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g01257 928 Gene3D Ubiquitin Conjugating Enzyme 641 920 IPR016135 -
Lapu6g01257 928 MobiDBLite consensus disorder prediction 526 546 - -
Lapu6g01257 928 PANTHER (E3-INDEPENDENT) E2 UBIQUITIN-CONJUGATING ENZYME 5 920 - -
Lapu6g01257 928 CDD UBCc 681 834 IPR000608 -
Lapu6g01257 928 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 679 839 IPR000608 -
Lapu6g01257 928 SMART ubc_7 682 839 - -
Lapu6g01257 928 MobiDBLite consensus disorder prediction 1 29 - -
Lapu6g01257 928 MobiDBLite consensus disorder prediction 526 553 - -
Lapu6g01257 928 Pfam Ubiquitin-conjugating enzyme 684 830 IPR000608 -
Lapu6g01257 928 MobiDBLite consensus disorder prediction 10 29 - -
Lapu6g01257 928 FunFam Probable ubiquitin-conjugating enzyme E2 23 641 917 - -
Lapu6g01257 928 SUPERFAMILY UBC-like 672 848 IPR016135 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g01257 Lapu-Chr6 12361394 12368024 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g01257 23 922 Miscellaneous Gene Families AT2G33770 47.983 0.0 847
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g01257 K10581 - gmx:100805463 1587.01
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu6g01257 6 12361394 12368024 Lapu6g01257 6 12361394 12368024 ECH