Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g01249 ATGATTCTTCGCAGAATCGCAGCCGCGAGCAGGTCATACCATACAAGCAGGACGAATAAACCGAACCTGTACTCGAAAATAAGTCCCCTCGGAAATCCCAACACCAGTGTGGTACCGGTGCTCGACGAATGGGTGTACAAGGGGAACAAGGTCCGAGTCGCAGAACTTCAACGCATCATACGTGACCTTCGCAAACGCAGTAGGTTCTCCCAAGCCCTCCAGGTATCCGAGTGGATGGACATGAATGGTGTGTGCATATTCTCTCCAACGGAACACGCCGTGCATTTGGATCTGATTGGCAATGTTCAAGGATTCTCTTCTGCAGAAAGCTATTTTGATGCCTTGAGGGATATAGACAAAACCCATAAGACCTATGGTGCTCTCTTGAATTGCTATGTTCGCCAGCGTGAAACCGACAAGGCCCTCTCTCATTTTCAGAAAATGAAGGAGTTGGGGTTTGCTTCCTCTCCTCTAACTTACAATGTCATTATGGGTTTGTATACATCCATTGGGCAGCATGAGAAGGTTCCTGATGTGCTAATTGAGATGAAAAAGAACCAAGTCTTGCCTGACAACTTCAGCTACAGGATCTGTATAAATTCTTATGGCGTCAGGTCTGATTTGGGTGGAGTGGAAAGAGTGTTGAAAGAGATGGAGACTCAATCTCACGTTGTGATGGACTGGAACACTTACTCTATCGTGGCCAATTTTTATATAAAAGCTGGGCATACAGTTGAGGCAGTTTCTGCCCTGAAGAAATCTGAGGAGAGGCTAGGTAACAAAGATGGCCAGGGTCACAATCATCTTATCTCTCTGTATGCCCGACTTGGGCTGAAGAACGAGGTCATGAGAATATGGGATCTGGAGAAAAGTGCTTGCAAGAGGTGCATAAACAGGGATTTCACAACCATGTTAGAATCTCTGGTAAAGCTTGGGGAGCTCGACGAAGCTGAGAAAATACTTATGGAATGGGAATCCTCTGGCAATTGTTATGATTTTGGAATCCCTAGTATTGTAATAATTGGGTATGCACAAAAAGGTTTGCATGAGAAAGCCGAGGGCATGCTCCTAGAGTTTCAAAATAAGGAAAAGCTCACAACCCCAAACTGTTGGTCGATAGTGGCAGGCGGATATCTTCACAAGGGTGAGATGGAGAAAGCATTGAAGTGCTTTAAAACTGCCCTCTCTATGTTCGTGGAAAAGAAAGGATGGAAGCCGAATGCAAAGGTGGTTGCAGAACTGTTGCGTTGGATTGCTGATAACGGCAGTATTGAAGATGCAGAAGATTTCGTCAGATTATTAAGAAATGCCGTCCCAGTGAATAGACAAATGTATCATACCCTAATCAAGACTTATGTGCGAGGTGGTAAAGAAGTGGATGAGCTTCTGGACCACATGGAGAAAGATGGCATCGTTGAGAACAACGAAACTGAGAAAATAATTAACATCAGGAATGCATGA 1461 0.4476 MILRRIAAASRSYHTSRTNKPNLYSKISPLGNPNTSVVPVLDEWVYKGNKVRVAELQRIIRDLRKRSRFSQALQVSEWMDMNGVCIFSPTEHAVHLDLIGNVQGFSSAESYFDALRDIDKTHKTYGALLNCYVRQRETDKALSHFQKMKELGFASSPLTYNVIMGLYTSIGQHEKVPDVLIEMKKNQVLPDNFSYRICINSYGVRSDLGGVERVLKEMETQSHVVMDWNTYSIVANFYIKAGHTVEAVSALKKSEERLGNKDGQGHNHLISLYARLGLKNEVMRIWDLEKSACKRCINRDFTTMLESLVKLGELDEAEKILMEWESSGNCYDFGIPSIVIIGYAQKGLHEKAEGMLLEFQNKEKLTTPNCWSIVAGGYLHKGEMEKALKCFKTALSMFVEKKGWKPNAKVVAELLRWIADNGSIEDAEDFVRLLRNAVPVNRQMYHTLIKTYVRGGKEVDELLDHMEKDGIVENNETEKIINIRNA* 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g01249 486 Pfam PPR repeat 124 153 IPR002885 -
Lapu6g01249 486 Pfam PPR repeat 338 360 IPR002885 -
Lapu6g01249 486 Pfam PPR repeat 370 392 IPR002885 -
Lapu6g01249 486 Pfam PPR repeat 301 328 IPR002885 -
Lapu6g01249 486 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 156 190 IPR002885 -
Lapu6g01249 486 PANTHER OS12G0527900 PROTEIN 16 469 - -
Lapu6g01249 486 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 121 155 IPR002885 -
Lapu6g01249 486 FunFam Pentatricopeptide repeat-containing protein mitochondrial 53 264 - -
Lapu6g01249 486 Pfam PPR repeat family 159 202 IPR002885 -
Lapu6g01249 486 NCBIfam pentatricopeptide repeat 301 330 IPR002885 -
Lapu6g01249 486 NCBIfam pentatricopeptide repeat 124 153 IPR002885 -
Lapu6g01249 486 NCBIfam pentatricopeptide repeat 159 191 IPR002885 -
Lapu6g01249 486 SUPERFAMILY TPR-like 124 400 IPR011990 GO:0005515
Lapu6g01249 486 SUPERFAMILY TPR-like 306 397 IPR011990 GO:0005515
Lapu6g01249 486 Gene3D Tetratricopeptide repeat domain 206 290 IPR011990 GO:0005515
Lapu6g01249 486 Gene3D Tetratricopeptide repeat domain 397 482 IPR011990 GO:0005515
Lapu6g01249 486 Gene3D Tetratricopeptide repeat domain 31 205 IPR011990 GO:0005515
Lapu6g01249 486 Gene3D Tetratricopeptide repeat domain 291 396 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g01249 Lapu-Chr6 12300085 12302125 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g01249 23 449 EF-hand Containing Proteins AT1G02150 32.009 3.17e-76 246
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g01249 - - gmx:100805658 838.565
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu6g01249 6 12300085 12302125 Lapu6g01249 6 12300085 12302125 ECH